View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2991_low_2 (Length: 637)
Name: NF2991_low_2
Description: NF2991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2991_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 17 - 637
Target Start/End: Complemental strand, 7734166 - 7733546
Alignment:
| Q |
17 |
attaatattacattgaaaattgaaataacactcattttggatcaaatgttttgtttacaaatgtgacactaataatgggatggaaggagtactaccaaaa |
116 |
Q |
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| T |
7734166 |
attaatattacattgaaaattgaaataacactcgttttggatcaaatgttttgtttacaaatgtgacactaataatgggatggaaggagtactaccaaaa |
7734067 |
T |
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| Q |
117 |
ttaaaaaggccttcataacacactgaacttcaatccctattcattagaaatgaatattaaaaataaaattttgggagaacaggttgaaaagatccttgat |
216 |
Q |
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| T |
7734066 |
ttaaaaaggtcttcataacacactgaacttcaatccctattcattagaaatgaatattaaaaataaaattttgggagaacaggttgaaaagatccttgat |
7733967 |
T |
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| Q |
217 |
tcttctgatctggggagttttacttagatgaatttgtttgtcttattgcctgcacggttatatcagcttttataattgctttctgtgtcttcatgaagct |
316 |
Q |
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| T |
7733966 |
tcttctgatctggggagttttacttagatgaatttgtttgtcttattgcctgcacggttatatcagcttttataattgctttctgtgtcttcatgaagct |
7733867 |
T |
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| Q |
317 |
aacatgaatcaatttcccttcaggtactattgctgttgtgcatgaaggatatttcctgtggggagtttttcgcgcaaagaaatctgttactgctaatgaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7733866 |
aacatgaatcaatttcccttcaggtactattgctgttgtgcatgaaggatatttcctgtggggagtttttcgcacaaagaaatctgttactgctaatgaa |
7733767 |
T |
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| Q |
417 |
agattacctcctgacatggatcctattgatgatgatatggacattgatatgatgggaggaaatgatgtgggaagaattgataatgttcttaatcacaatc |
516 |
Q |
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| T |
7733766 |
agattacctcctgacatggatcctattgatgatgatatggacattgatatgatgggaggaaatgatgtgggaagaattgataatgttcttaatcacaatc |
7733667 |
T |
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| Q |
517 |
tcaagagttcctctcagttgcctttggaaagaacacctcttcagagcagcacttctaagaaggtagaagaaaagacctcaacctcttcaagcaatttgaa |
616 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7733666 |
tcaagagttcctctcagttgccgttggaaagaacacctcttcagagcagcacttctaagaaggtagaagaaaagacctcaacctcttcaagcaatttgaa |
7733567 |
T |
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| Q |
617 |
tggtagggacatatcaatttc |
637 |
Q |
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| T |
7733566 |
tggtagggacatatcaatttc |
7733546 |
T |
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