View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2991_low_4 (Length: 431)

Name: NF2991_low_4
Description: NF2991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2991_low_4
NF2991_low_4
[»] chr3 (24 HSPs)
chr3 (45-423)||(53620213-53620590)
chr3 (45-97)||(3707030-3707082)
chr3 (45-94)||(30131994-30132043)
chr3 (45-94)||(34306071-34306120)
chr3 (45-94)||(41962083-41962132)
chr3 (45-94)||(43237215-43237264)
chr3 (45-94)||(47789554-47789603)
chr3 (45-94)||(3043226-3043275)
chr3 (45-94)||(33982827-33982876)
chr3 (121-170)||(39114960-39115009)
chr3 (45-94)||(47714780-47714829)
chr3 (45-94)||(49860760-49860809)
chr3 (45-94)||(55439508-55439557)
chr3 (45-93)||(29623162-29623210)
chr3 (216-259)||(35283250-35283293)
chr3 (45-96)||(38515175-38515226)
chr3 (45-87)||(36796347-36796389)
chr3 (117-170)||(1132931-1132984)
chr3 (45-94)||(23163448-23163497)
chr3 (45-94)||(24242200-24242249)
chr3 (45-94)||(43007604-43007653)
chr3 (45-94)||(44412262-44412311)
chr3 (45-94)||(46312529-46312578)
chr3 (45-97)||(32858755-32858807)
[»] chr1 (34 HSPs)
chr1 (45-103)||(50586972-50587029)
chr1 (45-94)||(23871571-23871620)
chr1 (46-100)||(47742456-47742510)
chr1 (45-94)||(1688324-1688373)
chr1 (45-94)||(13255268-13255317)
chr1 (45-94)||(27499908-27499957)
chr1 (45-94)||(40707306-40707355)
chr1 (46-94)||(32295569-32295617)
chr1 (46-94)||(33991466-33991514)
chr1 (45-96)||(52073553-52073604)
chr1 (45-95)||(50599068-50599118)
chr1 (45-94)||(2926042-2926091)
chr1 (45-98)||(17556592-17556644)
chr1 (45-94)||(17688262-17688311)
chr1 (216-261)||(49102848-49102893)
chr1 (45-97)||(36886794-36886846)
chr1 (217-261)||(50084291-50084335)
chr1 (119-170)||(33324657-33324708)
chr1 (45-103)||(7915437-7915495)
chr1 (54-96)||(36385275-36385317)
chr1 (45-90)||(1523518-1523563)
chr1 (45-94)||(11017523-11017572)
chr1 (49-94)||(14152628-14152673)
chr1 (45-94)||(26757263-26757312)
chr1 (45-94)||(38794894-38794943)
chr1 (45-94)||(39889766-39889815)
chr1 (45-94)||(42162161-42162210)
chr1 (45-94)||(43572060-43572108)
chr1 (216-261)||(50097777-50097822)
chr1 (46-94)||(938346-938394)
chr1 (217-261)||(5883477-5883521)
chr1 (45-97)||(26940530-26940582)
chr1 (48-100)||(49103054-49103105)
chr1 (117-161)||(50476560-50476604)
[»] chr8 (18 HSPs)
chr8 (45-94)||(34272439-34272488)
chr8 (45-94)||(36906111-36906160)
chr8 (45-100)||(39193855-39193910)
chr8 (45-94)||(6742-6791)
chr8 (45-94)||(1942141-1942190)
chr8 (45-94)||(4734604-4734653)
chr8 (45-93)||(34304640-34304688)
chr8 (45-100)||(79715-79770)
chr8 (46-93)||(31297456-31297503)
chr8 (161-243)||(13258593-13258676)
chr8 (45-103)||(35376727-35376785)
chr8 (45-98)||(1840309-1840362)
chr8 (45-94)||(3404681-3404730)
chr8 (117-170)||(10605153-10605206)
chr8 (45-94)||(37659639-37659688)
chr8 (119-170)||(16424171-16424223)
chr8 (50-94)||(29611921-29611965)
chr8 (122-170)||(31305781-31305829)
[»] chr5 (19 HSPs)
chr5 (45-94)||(38302461-38302510)
chr5 (50-93)||(4649096-4649139)
chr5 (119-170)||(32125269-32125320)
chr5 (45-94)||(1658101-1658150)
chr5 (117-170)||(9096341-9096394)
chr5 (45-94)||(10295407-10295456)
chr5 (45-94)||(26149527-26149576)
chr5 (45-94)||(27480278-27480327)
chr5 (45-94)||(35700984-35701033)
chr5 (119-170)||(3676511-3676562)
chr5 (119-170)||(19389824-19389875)
chr5 (47-85)||(6816258-6816296)
chr5 (45-94)||(2020905-2020954)
chr5 (48-97)||(6491427-6491476)
chr5 (124-172)||(13450508-13450557)
chr5 (117-170)||(37909023-37909076)
chr5 (45-77)||(13449865-13449897)
chr5 (46-94)||(17092823-17092871)
chr5 (221-261)||(35704780-35704820)
[»] chr4 (30 HSPs)
chr4 (45-98)||(54205760-54205813)
chr4 (45-94)||(7182299-7182348)
chr4 (45-94)||(16535615-16535664)
chr4 (45-94)||(37756821-37756870)
chr4 (45-94)||(38317337-38317386)
chr4 (45-94)||(41363920-41363969)
chr4 (45-94)||(48830923-48830972)
chr4 (45-97)||(35959120-35959172)
chr4 (47-94)||(17873122-17873169)
chr4 (123-170)||(28880029-28880076)
chr4 (45-94)||(13270381-13270430)
chr4 (117-170)||(48417606-48417659)
chr4 (45-94)||(56504576-56504625)
chr4 (46-94)||(904122-904170)
chr4 (220-259)||(3075639-3075678)
chr4 (119-170)||(47063716-47063767)
chr4 (45-103)||(21081274-21081332)
chr4 (46-100)||(46177029-46177083)
chr4 (216-262)||(46669816-46669862)
chr4 (119-164)||(13984976-13985021)
chr4 (45-94)||(24279838-24279887)
chr4 (216-261)||(31418829-31418874)
chr4 (45-94)||(31529943-31529992)
chr4 (45-94)||(38365953-38366002)
chr4 (46-103)||(45022818-45022875)
chr4 (45-98)||(48620204-48620256)
chr4 (117-170)||(51258735-51258788)
chr4 (217-261)||(6836563-6836607)
chr4 (45-93)||(13269877-13269925)
chr4 (45-97)||(45971486-45971538)
[»] chr7 (18 HSPs)
chr7 (45-94)||(23620901-23620950)
chr7 (45-94)||(33113749-33113798)
chr7 (45-94)||(34652159-34652208)
chr7 (45-97)||(3658616-3658668)
chr7 (117-161)||(19644323-19644367)
chr7 (45-93)||(33406741-33406789)
chr7 (45-94)||(28437650-28437699)
chr7 (45-94)||(42620459-42620508)
chr7 (45-100)||(38505436-38505491)
chr7 (120-170)||(38505340-38505390)
chr7 (216-261)||(4787875-4787920)
chr7 (45-94)||(5968151-5968200)
chr7 (45-94)||(19644225-19644274)
chr7 (216-261)||(22556577-22556622)
chr7 (216-261)||(32228931-32228976)
chr7 (216-261)||(40985272-40985317)
chr7 (46-94)||(36747222-36747270)
chr7 (220-260)||(38679864-38679904)
[»] chr2 (22 HSPs)
chr2 (45-93)||(19382802-19382850)
chr2 (45-97)||(36030738-36030790)
chr2 (119-170)||(15803212-15803263)
chr2 (49-100)||(16625883-16625934)
chr2 (47-94)||(25960718-25960765)
chr2 (216-261)||(11522055-11522100)
chr2 (45-94)||(12964080-12964129)
chr2 (45-94)||(44137076-44137125)
chr2 (45-93)||(3039057-3039105)
chr2 (45-100)||(4003352-4003407)
chr2 (47-94)||(6711940-6711987)
chr2 (45-100)||(16519191-16519245)
chr2 (45-94)||(8555884-8555933)
chr2 (49-98)||(12941905-12941953)
chr2 (216-261)||(15803335-15803380)
chr2 (45-94)||(18826340-18826389)
chr2 (45-94)||(30312513-30312562)
chr2 (45-94)||(32243399-32243448)
chr2 (46-94)||(8411038-8411086)
chr2 (45-97)||(31082740-31082792)
chr2 (46-94)||(36567386-36567434)
chr2 (46-94)||(38023553-38023601)
[»] chr6 (9 HSPs)
chr6 (119-170)||(20820536-20820587)
chr6 (45-100)||(26713787-26713842)
chr6 (45-94)||(1029217-1029266)
chr6 (45-94)||(24734806-24734855)
chr6 (117-170)||(26713885-26713938)
chr6 (45-94)||(29241941-29241990)
chr6 (119-170)||(29054601-29054652)
chr6 (45-90)||(14275910-14275955)
chr6 (45-93)||(5825257-5825305)
[»] scaffold0036 (1 HSPs)
scaffold0036 (45-100)||(82720-82775)
[»] scaffold1163 (1 HSPs)
scaffold1163 (45-97)||(1982-2034)
[»] scaffold0373 (1 HSPs)
scaffold0373 (217-261)||(8979-9023)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 45 - 423
Target Start/End: Original strand, 53620213 - 53620590
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcataatacaaaatctttcaaaaattgtattggatgaggatttta 144  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53620213 ggaaggagcaagtgggagaaatagaggacattgagagcggagggctttgggggtttcataatacaaaatctttcaaaaattgtattggatgaggatttta 53620312  T
Q  145 gaggatttatatgaattcttaaaattaaaacatactaattgaaagaattaatttatcattctctnnnnnnntactctttcaaaaaatgtgtaagatttct 244  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  53620313 gagggtttatatgaattattaaaattaaaacatactaattgtaagaattaatttatcattctctaaaaaaatactctttcaaaaaatgtgtaagatttct 53620412  T
Q  245 caaatttttcctatattacccctccctccaaacaaagccttaggaaattattacaagacaaaactgatcaaaacatgagttaggtaattatacacatgat 344  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  53620413 caaatttttcctatattacccctccctccaaacaaagccttagg-aattattacaagacaaaactgatcaaaacatgagttagataattatacacatgat 53620511  T
Q  345 aaggggttagtgagtgtctaactaagtcgactaatcccaaactaacttaacagtcagtaactacaacagcttaagtgaa 423  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53620512 aaggggttagtgagtgtctaactaagtcaactaatcccaaactaacttaacagtcagtaactacaacagcttaagtgaa 53620590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 3707030 - 3707082
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 97  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  3707030 ggaaggagcaagtggaagaaatagatgacattgagaggagaaggctttggggg 3707082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 30132043 - 30131994
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  30132043 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 30131994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 34306071 - 34306120
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  34306071 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 34306120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 41962132 - 41962083
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  41962132 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 41962083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 43237215 - 43237264
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  43237215 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 43237264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 47789603 - 47789554
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  47789603 ggaaggagcaagtggaagaaatagaagacattgagaggagagagctttgg 47789554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 3043275 - 3043226
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  3043275 ggaaggagcaagtggaagaaatagaagacattgggaggagaggcctttgg 3043226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 33982876 - 33982827
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  33982876 ggaaggagcaagtggaagaaatagaagacattgggaggagaggactttgg 33982827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 39115009 - 39114960
Alignment:
Q  121 aaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||| |||||    
T  39115009 aaattgtattggaggaggactttagagggtttatatgaattcttcaaatt 39114960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 47714829 - 47714780
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||||||    
T  47714829 ggaaggagcaagtggaagaaatagaagacattggaaggagagggctttgg 47714780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 49860760 - 49860809
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  49860760 ggaaggagcaattggaagaaatagaagacattgggaggagagggctttgg 49860809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 55439508 - 55439557
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||| |||||||||| ||||||||||||||||| ||||||||| ||||||    
T  55439508 ggaatgagcaagtggaagaaatagaggacattgggaggagaggactttgg 55439557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 29623162 - 29623210
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 93  Q
    ||||||||||||||| ||||||||||||||||  |||| ||||||||||    
T  29623162 ggaaggagcaagtggaagaaatagaggacattaggaggggagggctttg 29623210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 35283250 - 35283293
Alignment:
Q  216 tactctttcaaaaaatgtgtaagatttctcaaatttttcctata 259  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||    
T  35283250 tactctttcaaaaaatgtgaaagatttctcaattttctcctata 35283293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 38515175 - 38515226
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggg 96  Q
    ||||||||||||||  ||||||||| || |||| ||||||||||||||||||    
T  38515175 ggaaggagcaagtgaaagaaatagaagatattgggaggagagggctttgggg 38515226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 36796347 - 36796389
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagg 87  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||    
T  36796347 ggaaggagcaagtggaagaaatagaagacattgggaggagagg 36796389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 1132984 - 1132931
Alignment:
Q  117 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||||||||||| |||| |||| |||| |||| |||||||||| |||||    
T  1132984 tcaaaaattgtattggaggagggttttggagggtttacatgaattctttaaatt 1132931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 23163448 - 23163497
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| |||||   ||||||||||||||||    
T  23163448 ggaaggagcaagtggaagaaatagaagacatcaggaggagagggctttgg 23163497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 24242249 - 24242200
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| || |||| ||||||||| ||||||    
T  24242249 ggaaggagcaagtggaagaaatagaagatattgggaggagaggactttgg 24242200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 43007653 - 43007604
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||| ||||||||| ||||||||| || |||| ||||||||||||||||    
T  43007653 ggaagtagcaagtggaagaaatagaagatattgggaggagagggctttgg 43007604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 44412311 - 44412262
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  44412311 ggaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 44412262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 46312578 - 46312529
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||  |||||| ||||||||| ||||||| ||||||||||||||||    
T  46312578 ggaaggactaagtggaagaaatagaagacattgggaggagagggctttgg 46312529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 32858755 - 32858807
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 97  Q
    |||| |||||||||| ||||||||| ||||||||||||  | |||||||||||    
T  32858755 ggaatgagcaagtggaagaaatagatgacattgagagggaaaggctttggggg 32858807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 50586972 - 50587029
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 103  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  50586972 ggaaggagcaagtggaagaaatagaggacattgagagg-gagggctttggggggttcat 50587029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 23871620 - 23871571
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  23871620 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 23871571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 47742456 - 47742510
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 100  Q
    ||||||| |||||| |||||||||||||||||||| | |||||||||||||||||    
T  47742456 gaaggagtaagtggaagaaatagaggacattgagaagggagggctttggggggtt 47742510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 1688373 - 1688324
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  1688373 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 1688324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 13255268 - 13255317
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  13255268 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 13255317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 27499908 - 27499957
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  27499908 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 27499957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 40707355 - 40707306
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  40707355 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 40707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 32295569 - 32295617
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  32295569 gaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 32295617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 33991466 - 33991514
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  33991466 gaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 33991514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 52073604 - 52073553
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggg 96  Q
    ||||||||||||||| ||||||||| |||||||||||| || ||||||||||    
T  52073604 ggaaggagcaagtggaagaaatagatgacattgagaggggaaggctttgggg 52073553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 50599118 - 50599068
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggg 95  Q
    ||||||||||||||| | ||||||||||| |||||||| ||||||||||||    
T  50599118 ggaaggagcaagtggaaaaaatagaggactttgagaggggagggctttggg 50599068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 2926091 - 2926042
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| | ||||||| ||||||| ||||||||||||||||    
T  2926091 ggaaggagcaagtggaaaaaatagaagacattgggaggagagggctttgg 2926042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 17556592 - 17556644
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 98  Q
    |||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||    
T  17556592 ggaaggagtaagtggaagaaatagaggacattgggaggaga-ggctttgggggg 17556644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 17688262 - 17688311
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| |||||||||  |||||| ||||||||||||||||    
T  17688262 ggaaggagcaagtggaagaaatagaaaacattgggaggagagggctttgg 17688311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 49102893 - 49102848
Alignment:
Q  216 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  49102893 tactctttcaaaaaatgtgaaagatttctcaatttttccctatatt 49102848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 36886794 - 36886846
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 97  Q
    |||| |||||||||| |||||||||||| | ||||||| ||||||||||||||    
T  36886794 ggaatgagcaagtggaagaaatagaggaaaatgagaggggagggctttggggg 36886846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 50084291 - 50084335
Alignment:
Q  217 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    |||||||||||||||||| || ||||||||| |||||||||||||    
T  50084291 actctttcaaaaaatgtgaaaaatttctcaattttttcctatatt 50084335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 33324657 - 33324708
Alignment:
Q  119 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||| |||||    
T  33324657 aaaaattgtattagaggagggttttagagggtttatatgaattcttcaaatt 33324708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 7915437 - 7915495
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 103  Q
    ||||||||||||||| | |||||||| || ||| |||  ||||||||||||||||||||    
T  7915437 ggaaggagcaagtggaaaaaatagagaactttgggagaggagggctttggggggttcat 7915495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 36385275 - 36385317
Alignment:
Q  54 aagtgggagaaatagaggacattgagaggagagggctttgggg 96  Q
    |||||| ||||||||||||||||||||| |||||| |||||||    
T  36385275 aagtggaagaaatagaggacattgagagaagagggttttgggg 36385317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 1523518 - 1523563
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggct 90  Q
    |||||||||| |||| ||||||||| ||||||| ||||||||||||    
T  1523518 ggaaggagcaggtggaagaaatagaagacattgggaggagagggct 1523563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 11017523 - 11017572
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||| | ||||||||||| | ||||||||||    
T  11017523 ggaaggagcaagtggaagaaatatatgacattgagagaaaagggctttgg 11017572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 14152628 - 14152673
Alignment:
Q  49 ggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  14152628 ggagcaagtggaagaaatagaagacattgggaggagagggttttgg 14152673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 26757312 - 26757263
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||| ||| ||||||||| || |||| ||||||||||||||||    
T  26757312 ggaaggagcaaatggaagaaatagaagatattgggaggagagggctttgg 26757263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 38794894 - 38794943
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| | ||||||| || |||| ||||||||||||||||    
T  38794894 ggaaggagcaagtggaaaaaatagaagatattgggaggagagggctttgg 38794943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 39889815 - 39889766
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||| |||||| | ||||||| ||||||| ||||||||||||||||    
T  39889815 ggaaggagtaagtggaaaaaatagaagacattgggaggagagggctttgg 39889766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 42162210 - 42162161
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  42162210 ggaaggagcaagtggaagaaatagatgacattggaaggagagggttttgg 42162161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 43572108 - 43572060
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  43572108 ggaatgagcaagtggaagaaatagaagacattg-gaggagagggctttgg 43572060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 50097777 - 50097822
Alignment:
Q  216 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    ||||||||||||||||||| |||||||||||| |||| | ||||||    
T  50097777 tactctttcaaaaaatgtgaaagatttctcaatttttccttatatt 50097822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 938394 - 938346
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||| ||||||| ||||||||| || ||||||||||||||| |||||    
T  938394 gaaggatcaagtggaagaaatagaagatattgagaggagagggttttgg 938346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 5883521 - 5883477
Alignment:
Q  217 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    ||||||||||||||| || || ||||||||| |||||||||||||    
T  5883521 actctttcaaaaaatatgaaaaatttctcaattttttcctatatt 5883477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 26940530 - 26940582
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 97  Q
    ||||||||||||||| ||||||||| |||||||  ||||||| |||| |||||    
T  26940530 ggaaggagcaagtggaagaaatagaagacattggaaggagagagcttcggggg 26940582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 49103105 - 49103054
Alignment:
Q  48 aggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 100  Q
    ||||| |||||| ||||||||||||||||| |||||| ||||||||| |||||    
T  49103105 aggagtaagtggaagaaatagaggacattgggaggag-gggctttggagggtt 49103054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 50476560 - 50476604
Alignment:
Q  117 tcaaaaattgtattggatgaggattttagaggatttatatgaatt 161  Q
    ||||||||||||||||| |||| |||| |||| ||||||||||||    
T  50476560 tcaaaaattgtattggaggagggttttcgagggtttatatgaatt 50476604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 34272439 - 34272488
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  34272439 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 34272488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 36906111 - 36906160
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  36906111 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 36906160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 39193855 - 39193910
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 100  Q
    ||||| ||||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  39193855 ggaagtagcaagtggaagaaatagagtacattgggaggggagggctttggggggtt 39193910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 6742 - 6791
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| |||||||    
T  6742 ggaaggagcaagtggaagaaatagaagacattgggaggagagagctttgg 6791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 1942190 - 1942141
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||| ||||||| ||||||||| ||||||| ||||||||||||||||    
T  1942190 ggaaggatcaagtggaagaaatagaagacattgggaggagagggctttgg 1942141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 4734653 - 4734604
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  4734653 ggaaggagcaagtggaagaaatagaagacattgggaggagagggttttgg 4734604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 34304640 - 34304688
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 93  Q
    ||||||||||||||| ||||||||| |||||| ||| ||||||||||||    
T  34304640 ggaaggagcaagtggaagaaatagaagacattaagatgagagggctttg 34304688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 79770 - 79715
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 100  Q
    |||| |||||||||| |||||||||||| | || |||| |||||||||||||||||    
T  79770 ggaacgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggggtt 79715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 31297503 - 31297456
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 93  Q
    |||||||||||||| ||||||||| ||||||| ||||||| |||||||    
T  31297503 gaaggagcaagtggaagaaatagaagacattgggaggagatggctttg 31297456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 13258593 - 13258676
Alignment:
Q  161 tcttaaaattaaaac-atactaattgaaagaattaatttatcattctctnnnnnnntactctttcaaaaaatgtgtaagatttc 243  Q
    ||||||||||||||  ||| |||| | ||| ||||||||||||||||||       ||||||||||||||||||| ||||||||    
T  13258593 tcttaaaattaaaaatatattaatcgtaagcattaatttatcattctctaaaaaaatactctttcaaaaaatgtgaaagatttc 13258676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 35376785 - 35376727
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 103  Q
    ||||| |||||||||  |||||| |||||||||| ||| ||| ||||||||||||||||    
T  35376785 ggaagaagcaagtggacgaaataaaggacattgaaaggggagagctttggggggttcat 35376727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 1840362 - 1840309
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 98  Q
    ||||||||||||||| |||||| |||||||||  |||  |||||||||||||||    
T  1840362 ggaaggagcaagtggaagaaattgaggacattcggagaggagggctttgggggg 1840309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 3404730 - 3404681
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||  ||||||| ||||||||    
T  3404730 ggaaggagcaagtggaagaaatagaagacattaggaggagaaggctttgg 3404681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 10605206 - 10605153
Alignment:
Q  117 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||| |||||||||||||||| |||| |||  ||||||||||||||| |||||    
T  10605206 tcaaatattgtattggatgagggttttcgagagtttatatgaattctttaaatt 10605153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 37659688 - 37659639
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||  ||||| ||||||||| ||||||| ||||||||||||||||    
T  37659688 ggaaggagtgagtggaagaaatagaagacattgggaggagagggctttgg 37659639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 16424171 - 16424223
Alignment:
Q  119 aaaaattgtattggatgaggatttt-agaggatttatatgaattcttaaaatt 170  Q
    |||||||||||| || ||||||||| ||||| ||||||||||||||| |||||    
T  16424171 aaaaattgtattagaggaggattttgagagggtttatatgaattcttcaaatt 16424223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 29611921 - 29611965
Alignment:
Q  50 gagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||||| ||||||| | ||||||| ||||||||||||||||    
T  29611921 gagcaagtggaagaaatataagacattgggaggagagggctttgg 29611965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 31305829 - 31305781
Alignment:
Q  122 aattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||||||  |||||||| |||| ||||||||||||||| |||||    
T  31305829 aattgtattggagaaggattttggagggtttatatgaattcttcaaatt 31305781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 38302510 - 38302461
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  38302510 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 38302461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 4649139 - 4649096
Alignment:
Q  50 gagcaagtgggagaaatagaggacattgagaggagagggctttg 93  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  4649139 gagcaagtggaagaaatagaagacattgagaggagagggctttg 4649096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 32125320 - 32125269
Alignment:
Q  119 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||||||||| |||||||||||||| ||| ||||||||||| |||||    
T  32125320 aaaaattgtattggaggaggattttagagggtttgtatgaattcttcaaatt 32125269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 1658101 - 1658150
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  1658101 ggaaggagcaagtggaagaaatagaagacattgggaggagaggactttgg 1658150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 9096341 - 9096394
Alignment:
Q  117 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    |||| |||||||||||| ||||||||| |||| ||||||||||||||| |||||    
T  9096341 tcaacaattgtattggaggaggattttggagggtttatatgaattcttcaaatt 9096394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 10295407 - 10295456
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||| ||||||||    
T  10295407 ggaaggagcaagtggaagaaatagaagacattgggaggagatggctttgg 10295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 26149527 - 26149576
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||| ||||||| ||||||||| ||||||| ||||||||||||||||    
T  26149527 ggaaggatcaagtggaagaaatagaagacattgggaggagagggctttgg 26149576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 27480327 - 27480278
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||| ||||||||| ||||||||| ||||||| ||||||||||||||||    
T  27480327 ggaagaagcaagtggaagaaatagaagacattgggaggagagggctttgg 27480278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 35700984 - 35701033
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  35700984 ggaaggagcaagtgaaagaaatagaagacattgggaggagagggctttgg 35701033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 3676562 - 3676511
Alignment:
Q  119 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||||||||| |||||||||  ||| ||||||||||||||| |||||    
T  3676562 aaaaattgtattggaggaggattttgaagggtttatatgaattcttcaaatt 3676511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 19389875 - 19389824
Alignment:
Q  119 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||||||||| ||||||||| |||| |||| |||||||||| |||||    
T  19389875 aaaaattgtattggaggaggattttggagggtttacatgaattcttcaaatt 19389824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 6816258 - 6816296
Alignment:
Q  47 aaggagcaagtgggagaaatagaggacattgagaggaga 85  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  6816258 aaggagcaagtggaagaaatagatgacattgagaggaga 6816296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 2020905 - 2020954
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||  ||||||| |||||||| |||||||    
T  2020905 ggaaggagcaagtggaagaaatagtagacattgggaggagagagctttgg 2020954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 6491476 - 6491427
Alignment:
Q  48 aggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 97  Q
    |||||||||||| ||||||||| || ||||  ||||||||||||||||||    
T  6491476 aggagcaagtggaagaaatagaagaaattggtaggagagggctttggggg 6491427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 13450508 - 13450557
Alignment:
Q  124 ttgtattggatgaggattttagaggatttatatgaattctt-aaaattaa 172  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||||||    
T  13450508 ttgtattggaggaggattttggaggatttatatgaactcttcaaaattaa 13450557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 37909023 - 37909076
Alignment:
Q  117 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    |||||| |||||||||| |||| |||| |||| ||||||||||||||| |||||    
T  37909023 tcaaaagttgtattggaggagggttttggagggtttatatgaattcttcaaatt 37909076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 13449865 - 13449897
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattg 77  Q
    |||||||||||||||||||||| ||||||||||    
T  13449865 ggaaggagcaagtgggagaaattgaggacattg 13449897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 17092823 - 17092871
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||||||||| ||| ||||| |||||||  |||||||||||||||    
T  17092823 gaaggagcaagtggaagatatagaagacattggaaggagagggctttgg 17092871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 35704780 - 35704820
Alignment:
Q  221 tttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    |||||||||||||| |||||||||| | |||||||||||||    
T  35704780 tttcaaaaaatgtgaaagatttctctattttttcctatatt 35704820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 54205760 - 54205813
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 98  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  54205760 ggaaggagcaagtggaagaaatagaggactttgagaggggagggctttgggggg 54205813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 7182348 - 7182299
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  7182348 ggaaggagcaagtggaagaaatagaagacattgagaggagagagctttgg 7182299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 16535615 - 16535664
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  16535615 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 16535664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 37756870 - 37756821
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  37756870 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 37756821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 38317386 - 38317337
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  38317386 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 38317337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 41363969 - 41363920
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  41363969 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 41363920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 48830972 - 48830923
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  48830972 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 48830923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 35959120 - 35959172
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 97  Q
    ||||||||||||||| |||||||||| |||||| |||| ||||||||||||||    
T  35959120 ggaaggagcaagtggaagaaatagagtacattgtgaggggagggctttggggg 35959172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 17873122 - 17873169
Alignment:
Q  47 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  17873122 aaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 17873169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 28880029 - 28880076
Alignment:
Q  123 attgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||| ||||||||||| |||||||||||||||||||| |||||    
T  28880029 attgtattgaatgaggattttggaggatttatatgaattcttcaaatt 28880076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 13270430 - 13270381
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  13270430 ggaaggagcaagtggaagaaatagaagacattgggagtagagggctttgg 13270381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 48417659 - 48417606
Alignment:
Q  117 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||||||||||| ||||||||| |||| | ||||||||||||| |||||    
T  48417659 tcaaaaattgtattggaggaggattttggagggtctatatgaattcttcaaatt 48417606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 56504625 - 56504576
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  56504625 ggaaggagcaagtgcaagaaatagaagacattgggaggagagggctttgg 56504576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 904122 - 904170
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||||||||| ||||||||| ||||||  ||||||||||||||||    
T  904122 gaaggagcaagtggaagaaatagaagacattcggaggagagggctttgg 904170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 3075678 - 3075639
Alignment:
Q  220 ctttcaaaaaatgtgtaagatttctcaaatttttcctata 259  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  3075678 ctttcaaaaaatgtgaaagatttctgaaatttttcctata 3075639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 47063716 - 47063767
Alignment:
Q  119 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||| |||||    
T  47063716 aaaaattgtattggaagaggatttgagagggtttatgtgaattcttcaaatt 47063767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 21081274 - 21081332
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 103  Q
    ||||||||||||||| ||||||||| |||||||||||| ||  | ||||| ||||||||    
T  21081274 ggaaggagcaagtggaagaaatagatgacattgagaggggaatgttttggagggttcat 21081332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 46177083 - 46177029
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 100  Q
    |||||| ||||||| |||||||||| |||||| |||| ||||| |||||||||||    
T  46177083 gaaggaacaagtggaagaaatagagtacattgggaggggagggttttggggggtt 46177029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 46669862 - 46669816
Alignment:
Q  216 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatta 262  Q
    |||||||| |||||||||| |||||||||||| |||||||| |||||    
T  46669862 tactctttaaaaaaatgtgaaagatttctcaattttttcctgtatta 46669816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 13985021 - 13984976
Alignment:
Q  119 aaaaattgtattggatgaggattttagaggatttatatgaattctt 164  Q
    ||||||||||||||| |||| |||| |||||||||||||| |||||    
T  13985021 aaaaattgtattggaggagggttttggaggatttatatgagttctt 13984976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 24279838 - 24279887
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| || |||| | ||||||| ||||||||||||||||    
T  24279838 ggaaggagcaagtggaaggaataaaagacattgggaggagagggctttgg 24279887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 31418874 - 31418829
Alignment:
Q  216 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    |||||||||||||| |||| ||||||| |||| |||||||||||||    
T  31418874 tactctttcaaaaactgtgaaagatttatcaattttttcctatatt 31418829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 31529943 - 31529992
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||| | |||||||||| |||||    
T  31529943 ggaaggagcaagtggaagaaatagaagacatcgggaggagagggttttgg 31529992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 38365953 - 38366002
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| |||||||  |||||||| ||||||    
T  38365953 ggaaggagcaagtggaagaaatagaagacattggaaggagaggactttgg 38366002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 45022875 - 45022818
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 103  Q
    |||||||||||||| | |||||| |||| |||||||| ||||||||| | ||||||||    
T  45022875 gaaggagcaagtggaaaaaataggggactttgagaggggagggctttagtgggttcat 45022818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 48620204 - 48620256
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 98  Q
    |||||||| |||||| |||||||||||||||||  ||||| |||||||||||||    
T  48620204 ggaaggagtaagtggaagaaatagaggacattggaaggag-gggctttgggggg 48620256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 51258788 - 51258735
Alignment:
Q  117 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    |||||||||| ||||||||| |||||| |||||||||||  ||||||| |||||    
T  51258788 tcaaaaattgcattggatgaagattttggaggatttatacaaattcttcaaatt 51258735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 6836563 - 6836607
Alignment:
Q  217 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||    
T  6836563 actctttcaaaaaatgtgaaagagttctcaattttctcctatatt 6836607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 13269877 - 13269925
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 93  Q
    ||||||||||||||| ||||||||| ||||| | || ||||||||||||    
T  13269877 ggaaggagcaagtggaagaaatagaagacatcgtgaagagagggctttg 13269925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 45971486 - 45971538
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 97  Q
    |||| |||||||||| |||||||||||| | ||||||| ||||| ||||||||    
T  45971486 ggaatgagcaagtggaagaaatagaggaaaatgagaggggagggttttggggg 45971538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 23620950 - 23620901
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  23620950 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 23620901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 33113798 - 33113749
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  33113798 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 33113749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 34652208 - 34652159
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  34652208 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 34652159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 3658668 - 3658616
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 97  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||    
T  3658668 ggaaggagcaagtggaagaaatagaagacattgggaggagagagctttggggg 3658616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 19644323 - 19644367
Alignment:
Q  117 tcaaaaattgtattggatgaggattttagaggatttatatgaatt 161  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  19644323 tcaaaaattgtattggatgagggttttggaggatttatatgaatt 19644367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 33406789 - 33406741
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 93  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||    
T  33406789 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttg 33406741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 28437699 - 28437650
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||| | ||||||| ||||||||||||||||    
T  28437699 ggaaggagcaagtggaagaaataaaagacattgggaggagagggctttgg 28437650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 42620508 - 42620459
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  42620508 ggaatgagcaagtggaagaaatagaagacattgggaggagagggctttgg 42620459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 38505491 - 38505436
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 100  Q
    |||| |||||||||| |||||||||||| | || |||| |||||||||||||||||    
T  38505491 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggggtt 38505436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 38505390 - 38505340
Alignment:
Q  120 aaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    |||||||||||||| |||| |||| |||| ||||||||||||||| |||||    
T  38505390 aaaattgtattggaggagggttttggagggtttatatgaattcttcaaatt 38505340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 4787920 - 4787875
Alignment:
Q  216 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    ||||||||||||||||||| || ||||||||| |||| ||||||||    
T  4787920 tactctttcaaaaaatgtgaaaaatttctcaatttttccctatatt 4787875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 5968200 - 5968151
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||||| || |||||||    
T  5968200 ggaaggagcaagtggaagaaatagaagacattgggaggaaagcgctttgg 5968151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 19644225 - 19644274
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||| | |||||||||| ||||| |||||||    
T  19644225 ggaaggagcaagtggaagaaatacaagacattgagatgagagagctttgg 19644274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 22556622 - 22556577
Alignment:
Q  216 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    |||||||| |||||||||| |||||||||||| |||| ||||||||    
T  22556622 tactcttttaaaaaatgtgaaagatttctcaatttttccctatatt 22556577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 32228931 - 32228976
Alignment:
Q  216 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    ||||||||||||||||||| |||||||||||  ||||| |||||||    
T  32228931 tactctttcaaaaaatgtgaaagatttctcattttttttctatatt 32228976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 40985317 - 40985272
Alignment:
Q  216 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    ||||||||||||||||||| || ||||||| | |||||||||||||    
T  40985317 tactctttcaaaaaatgtgaaatatttctctattttttcctatatt 40985272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 36747222 - 36747270
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  36747222 gaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 36747270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 38679904 - 38679864
Alignment:
Q  220 ctttcaaaaaatgtgtaagatttctcaaatttttcctatat 260  Q
    ||||||||||||||| ||||||| ||||||||| |||||||    
T  38679904 ctttcaaaaaatgtgaaagatttatcaaattttccctatat 38679864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 19382802 - 19382850
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 93  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  19382802 ggaaggagcaagtggaagaaatagaagacattgagaggaaagggctttg 19382850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 36030738 - 36030790
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 97  Q
    ||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  36030738 ggaaggagccagtggaagaaatagaggaccttgagaagagagggctttggggg 36030790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 15803212 - 15803263
Alignment:
Q  119 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||| |||||    
T  15803212 aaaaattgtattggaggaggattttggagggtttatatgaattcttcaaatt 15803263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 16625934 - 16625883
Alignment:
Q  49 ggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 100  Q
    ||||||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  16625934 ggagcaagtggaagaaatagagtacattgggaggggagggctttggggggtt 16625883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 25960765 - 25960718
Alignment:
Q  47 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  25960765 aaggagcaagtggaagaaatagaagacattgaaaggagagggctttgg 25960718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 11522100 - 11522055
Alignment:
Q  216 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  11522100 tactctttcaaaaaatgtgaaagatttctcaatttttccctatatt 11522055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 12964129 - 12964080
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| |||||||    
T  12964129 ggaaggagcaagtggaagaaatagaagacattgggaggagagagctttgg 12964080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 44137076 - 44137125
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  44137076 ggaaggagcaaatggaagaaatagaagacattgggaggagagggctttgg 44137125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 3039105 - 3039057
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 93  Q
    ||||||||||||||| | ||||||| ||||||| |||||||||||||||    
T  3039105 ggaaggagcaagtggaaaaaatagaagacattgggaggagagggctttg 3039057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 4003352 - 4003407
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 100  Q
    |||| |||||||||| |||||||||||| | || |||| |||||||||||||||||    
T  4003352 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggggtt 4003407  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 6711987 - 6711940
Alignment:
Q  47 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||| ||| ||| ||||||||| ||||||||||||||||||||||||    
T  6711987 aaggaacaaatggaagaaatagaagacattgagaggagagggctttgg 6711940  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 16519245 - 16519191
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 100  Q
    ||||||||||||||| |||||||||| |||||| |||| ||||||||||| |||||    
T  16519245 ggaaggagcaagtggaagaaatagagtacattg-gaggggagggctttggtgggtt 16519191  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 8555933 - 8555884
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||| ||| |||||| |||||    
T  8555933 ggaaggagcaagtggaagaaatagaagacattgggagaagagggttttgg 8555884  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 12941953 - 12941905
Alignment:
Q  49 ggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 98  Q
    |||| |||||| ||||||||||||||||| ||||| ||||||||||||||    
T  12941953 ggagtaagtggaagaaatagaggacattgggagga-agggctttgggggg 12941905  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 15803335 - 15803380
Alignment:
Q  216 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||||    
T  15803335 tactctttcaaaaaatgtgaaagatttctcaattttcccctatatt 15803380  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 18826389 - 18826340
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| ||||||  || |||||||||||||    
T  18826389 ggaaggagcaagtggaagaaatagaagacattaggaagagagggctttgg 18826340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 30312562 - 30312513
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| |||||||||  |||||| |||||||||| |||||    
T  30312562 ggaaggagcaagtggaagaaatagaacacattgggaggagagggttttgg 30312513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 32243399 - 32243448
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||||||  || ||||||||| ||||||| ||||||||||||||||    
T  32243399 ggaaggagcaatgggaagaaatagaagacattgggaggagagggctttgg 32243448  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 8411086 - 8411038
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||||||| |  |||||||| ||||||| ||||||||||||||||    
T  8411086 gaaggagcaagttgaggaaatagaagacattgggaggagagggctttgg 8411038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 31082740 - 31082792
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 97  Q
    |||| |||||||||| |||||||||||| | || |||| ||||||||||||||    
T  31082740 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggg 31082792  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 36567434 - 36567386
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  36567434 gaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 36567386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 38023601 - 38023553
Alignment:
Q  46 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||||||||||| | ||||||||| |||||||| ||||||||| |||||    
T  38023601 gaaggagcaagtagaagaaatagaagacattgaaaggagagggttttgg 38023553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 20820587 - 20820536
Alignment:
Q  119 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    |||||||||||||||||||  |||||||||||||||||||||| || |||||    
T  20820587 aaaaattgtattggatgagagttttagaggatttatatgaatttttcaaatt 20820536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 26713787 - 26713842
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 100  Q
    ||||||||||||||| |||||||||| |||||| |||| |||||||||| ||||||    
T  26713787 ggaaggagcaagtggaagaaatagagtacattgggaggggagggctttgaggggtt 26713842  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 1029217 - 1029266
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||||||    
T  1029217 ggaaggagcaagtggaagaaatagaagacattggaaggagagggctttgg 1029266  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 24734806 - 24734855
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  24734806 ggaacgagcaagtggaagaaatagaagacattgggaggagagggctttgg 24734855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 26713885 - 26713938
Alignment:
Q  117 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||||||||||| |||| |||| |||| ||||||||||||||| |||||    
T  26713885 tcaaaaattgtattggaggagggttttggagggtttatatgaattcttcaaatt 26713938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 29241990 - 29241941
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 94  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  29241990 ggaaggagcaaatggaagaaatagaagacattgggaggagagggctttgg 29241941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 29054601 - 29054652
Alignment:
Q  119 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 170  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| || |||||    
T  29054601 aaaaattgtattgaatgaggatttttgagggtttatatgaatttttcaaatt 29054652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 14275910 - 14275955
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggct 90  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||    
T  14275910 ggaatgagcaagtggaagaaatagaagacattgggaggagagggct 14275955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 5825257 - 5825305
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 93  Q
    ||||||||||||||  ||||||||| ||||||| ||||||| |||||||    
T  5825257 ggaaggagcaagtgaaagaaatagaagacattgggaggagaaggctttg 5825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 82720 - 82775
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 100  Q
    ||||||||||||||| ||||||||| ||| ||||||| | |||||||| |||||||    
T  82720 ggaaggagcaagtggaagaaatagatgactttgagagaaaagggctttcgggggtt 82775  T

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Target: scaffold1163 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 1982 - 2034
Alignment:
Q  45 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 97  Q
    ||||||||||||||| ||||||||| || | || |||| ||||||||||||||    
T  1982 ggaaggagcaagtggaagaaatagaagaaaatgggaggggagggctttggggg 2034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 8979 - 9023
Alignment:
Q  217 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 261  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||    
T  8979 actctttcaaaaaatgtgaaagagttctcaattttctcctatatt 9023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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