View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2991_low_8 (Length: 249)
Name: NF2991_low_8
Description: NF2991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2991_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 29880078 - 29880321
Alignment:
| Q |
1 |
tttatcttgtcctagatattgcattttcatgcttatggcaaattctttctatttataactacttgtttctgttatatagaatatgtaatgtgattgactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29880078 |
tttatcttgtcctagatattgcattttcatgcttatggcaaattctttctatttataactacttgtttctgttatatagaatatgtaatgtgattgactt |
29880177 |
T |
|
| Q |
101 |
aacttgctatagttattttatgctaaaatcatttatagaattaagctatgtcctttcatatttatcttgtaaaattttagtagaacttgatgtgttgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
29880178 |
aacttgctatagttattttatgctaaaagcatttatagaattaagctatgtcctttcatatttatcttgtaaaactttagtaaaacttgatgtgttgaaa |
29880277 |
T |
|
| Q |
201 |
acattagcttaagttactttgcattgtaatcatcttcttctcac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29880278 |
acattagcttaagttactttgcattgtaatcatcttcttttcac |
29880321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 108 - 244
Target Start/End: Original strand, 20787320 - 20787459
Alignment:
| Q |
108 |
tatagttattttatgctaaaatcatttatagaattaagctatgtcctttcatatttat---cttgtaaaattttagtagaacttgatgtgttgaaaacat |
204 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20787320 |
tatagttattttatgctaaaagcattcatagaattacgctatctcctttcatatttattttcttgtaaaattttacaagaacttgatgtgttgaaaacat |
20787419 |
T |
|
| Q |
205 |
tagcttaagttactttgcattgtaatcatcttcttctcac |
244 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
20787420 |
tagcttaagttactttgcattgttatcatcttcttttcac |
20787459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 20787244 - 20787324
Alignment:
| Q |
1 |
tttatcttgtcctagatattgcattttc-atgcttatggcaaattctttctatttataacta-cttgtttctgttatatag |
79 |
Q |
| |
|
||||||||||| |||||||||||||||| || ||||||| |||||| || |||| ||||||| ||||||| |||||||||| |
|
|
| T |
20787244 |
tttatcttgtcgtagatattgcattttcaatacttatggaaaattccttttattcataactaccttgtttttgttatatag |
20787324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University