View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2992_high_12 (Length: 246)
Name: NF2992_high_12
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_high_12 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 8687440 - 8687212
Alignment:
| Q |
18 |
agtagttgtgtgcaatcgttccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcac |
117 |
Q |
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| T |
8687440 |
agtagttgtgtgcaatcgttccctggtcatagaatgagcaaaagagttgcgacgattaaggtgaaggcgaagaatgttgcagaagtaactagtaatgcac |
8687341 |
T |
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| Q |
118 |
ttgctttgtttcaaagttatgctacaaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaactttaaatcataccttattttatcaccc |
217 |
Q |
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| T |
8687340 |
ttgctttgtttcaaagttatgctactaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaacttgaaatcataccttattttatcaccc |
8687241 |
T |
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| Q |
218 |
cttgtttgtccatgtatatacacatgttt |
246 |
Q |
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| T |
8687240 |
cttgtttgtccatgtatatacacatgttt |
8687212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 8675026 - 8675248
Alignment:
| Q |
18 |
agtagttgtgtgcaatcgttccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcac |
117 |
Q |
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| T |
8675026 |
agtagttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcac |
8675125 |
T |
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| Q |
118 |
ttgctttgtttcaaagttatgctacaaggtatcgacaagcag---cggctagaaccgtcaagaagccatgaaaaac-tttaaatcataccttattttatc |
213 |
Q |
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| T |
8675126 |
ttgctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaactgtcaagaagccatgaaaaacttttaaatcataacttattttatc |
8675225 |
T |
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| Q |
214 |
accccttgtttgtccatgtatat |
236 |
Q |
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| T |
8675226 |
accccttgtttgtccatgtatat |
8675248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 8693257 - 8693478
Alignment:
| Q |
18 |
agtagttgtgtgcaatcgttccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcac |
117 |
Q |
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| T |
8693257 |
agtagttgtgtgcaatcgttccctggtcatagaatgagcaatagtgttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcac |
8693356 |
T |
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| Q |
118 |
ttgctttgtttcaaagttatgctacaaggtatcgacaagcag---cggctagaaccgtcaagaagccatgaaaaactttaaatcataccttattttatca |
214 |
Q |
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| T |
8693357 |
ttgctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaacttcgaagaagccatgaaaaactttaaatcataccttattttgtca |
8693456 |
T |
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| Q |
215 |
ccccttgtttgtccatgtatat |
236 |
Q |
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| T |
8693457 |
ccccttgtttgttcatgtatat |
8693478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 8696009 - 8695795
Alignment:
| Q |
18 |
agtagttgtgtgcaatcgttccctggttatagaatgagcaagagggttgcgacgattaaggttaaggcgaagaatgttgcagaagtaactagtaatgcac |
117 |
Q |
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| T |
8696009 |
agtagttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgcgacgattaaggtgaaggcgaagaatgttgcagaagttactagtaacgcac |
8695910 |
T |
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| Q |
118 |
ttgctttgtttcaaagttatgctacaaggtatcgacaagcagcggctagaaccgtcaagaagccatgaaaaactttaaatcataccttattttatcaccc |
217 |
Q |
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| T |
8695909 |
ttgctttgtttcaaagttatgctacaaggtatcgacaagaagcagctagaacttccaagaagccatgaaaatcttt-aatcatac---tttttgtcaccc |
8695814 |
T |
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| Q |
218 |
cttgtttgtccatgtatat |
236 |
Q |
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| T |
8695813 |
tttgtttgtccatgtatat |
8695795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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