View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2992_high_6 (Length: 417)
Name: NF2992_high_6
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 22 - 408
Target Start/End: Complemental strand, 30459792 - 30459407
Alignment:
| Q |
22 |
tggacttaacccttcattgcaaatctaaagaggatgatcttggagttcaatttctgcatcatggacaaagctttagttggaaatttagtcctagatttcc |
121 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459792 |
tggacttaacccttcattgcaaatccaaagaggatgatcttggagttcaacttctgcatcatggtcaaagctttagttggaaatttagtcctagatttcc |
30459693 |
T |
|
| Q |
122 |
tccgattttgttccaaacactttacttttgttcctttgcatggacaggtgaatttcatcattttgatatatacatacagggtgttcgcaatttagataat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30459692 |
tccgattttgttccaaacactttacttttgttcctttgcatggaccagtgaatcccatcattttgatatatacatacagggtgttcgcaatttagataat |
30459593 |
T |
|
| Q |
222 |
tgtgattattgcaattggaatgtatttaaatcaggaccatgtagacttcaggagcatggggaccctatttgctttcattgggataagtaacaaataatat |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30459592 |
tgtgattattgcaattggaatgtatttaaatcaggaccatgtagacttcaggaacatggggaccctatttgctttcattgggataagtaagaaataatat |
30459493 |
T |
|
| Q |
322 |
aataagtacttattttcaaatcaataaatgtgttgttctcaatttagggagaactcgatgtatcatcttaaatc-ttattagtataat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||| |
|
|
| T |
30459492 |
aataagtacttattttcaaatcaataaa--tgttgttctcaatttagggagaacttgatttattatcttaaatctttattagtataat |
30459407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 22 - 318
Target Start/End: Complemental strand, 30448231 - 30447933
Alignment:
| Q |
22 |
tggacttaacccttcattgcaaatctaaagaggatgatcttggagttcaatttctgcatcatggacaaagctttagttggaaatttagtcctagatttcc |
121 |
Q |
| |
|
||||||||||||||| |||| |||| ||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30448231 |
tggacttaacccttcgttgccaatccaaagatgatgatctcggaaaacaacttctgcatcatggacaaagctttagttggaaatttagtcctagatttcc |
30448132 |
T |
|
| Q |
122 |
tccgattttgttccaaacactttacttttgttcctttgcatggacaggtgaatttcatcattttgatatatacatacagggtgttcgcaatttagataat |
221 |
Q |
| |
|
||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
30448131 |
tccaatttttttccaaacactatacttctgttcctttgcatggaccggtgaatttcatcattttgatatatacgtacagggtgttgaaaaactagataat |
30448032 |
T |
|
| Q |
222 |
tgtgattattgcaattggaatgtatttaaatcaggaccatgtagacttcaggagcatggggaccctatttgctttcattgggataag--taacaaataa |
318 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || ||| | ||||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
30448031 |
tgtgattattgcaattggaatgtattcgaatcaggaccatgtagaactccggaaaaaggggaccctatttgctttccttggaataagactaacaaataa |
30447933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 25728631 - 25728568
Alignment:
| Q |
22 |
tggacttaacccttcattgcaaatctaaagaggatgatcttggagttcaatttctgcatcatgg |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
25728631 |
tggacttaacccttcattgcaaatctaaagatgatgatcttggagttcaccttcttcatcatgg |
25728568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 25183914 - 25183977
Alignment:
| Q |
22 |
tggacttaacccttcattgcaaatctaaagaggatgatcttggagttcaatttctgcatcatgg |
85 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
25183914 |
tggacttaactattcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatgg |
25183977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 25725254 - 25725191
Alignment:
| Q |
22 |
tggacttaacccttcattgcaaatctaaagaggatgatcttggagttcaatttctgcatcatgg |
85 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
25725254 |
tggacttaacccttcattgcaaatctgcagatgatgatcttggagttcatcttcttcatcatgg |
25725191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 25733662 - 25733599
Alignment:
| Q |
22 |
tggacttaacccttcattgcaaatctaaagaggatgatcttggagttcaatttctgcatcatgg |
85 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
25733662 |
tggacttaacccttcattgcaaatctgcagatgatgatcttggagttcatcttcttcatcatgg |
25733599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 9591360 - 9591401
Alignment:
| Q |
24 |
gacttaacccttcattgcaaatctaaagaggatgatcttgga |
65 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
9591360 |
gacttaacccttcattgtcaatctaaagatgatgatcttgga |
9591401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 38028317 - 38028396
Alignment:
| Q |
218 |
taattgtgattattgcaattggaatgtatttaaatcaggaccatgtagacttcaggagcatggggaccctatttgctttc |
297 |
Q |
| |
|
|||||| ||| |||||||||||||| |||| || ||||||||||||||| |||| | |||||||| ||||| ||||||| |
|
|
| T |
38028317 |
taattgcgatgattgcaattggaatatattcaagtcaggaccatgtagaattcaacaacatggggatcctatatgctttc |
38028396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 17373943 - 17373910
Alignment:
| Q |
37 |
attgcaaatctaaagaggatgatcttggagttca |
70 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
17373943 |
attgcaaatctaaagatgatgatcttggagttca |
17373910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 38407063 - 38407114
Alignment:
| Q |
34 |
ttcattgcaaatctaaagaggatgatcttggagttcaatttctgcatcatgg |
85 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
38407063 |
ttcattgtaaatctaaagatgatgatcttggagttcattttcttcataatgg |
38407114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University