View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2992_high_7 (Length: 371)
Name: NF2992_high_7
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 193611 - 193965
Alignment:
| Q |
1 |
ttgaaaactatatatatgctatattatttgtatttttgtggtattccccatatgctcaattatctgctaaatatggcaaaccttgtactaaaaactgcaa |
100 |
Q |
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| T |
193611 |
ttgaaaactatatatatgctatattatttgtatttttgtggtattccccgtatgctcaattatctgctaaagatggcaaaccttgtactaaaaactgcaa |
193710 |
T |
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| Q |
101 |
tcaacattcatcagtttaattatacctcaaattggggtgaggtaggtacatatacctacaagtccaaatgcgtatatataaagatatagtgactttctag |
200 |
Q |
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| T |
193711 |
tcaacattcatcagtttaattatacctcaaattggggtgaggtaggtacatatacctacaagtccaaatgcgtatatataaggatatagtgactttctag |
193810 |
T |
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| Q |
201 |
tgcaccaattgatccagattgcaacctaacattctttattatagtacatacatgccactcagattattatatatatatcatctgatcattcacggaaatt |
300 |
Q |
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| T |
193811 |
tgcaccaattgatccagattgcaacctaacattctttattatagtacatacatgccactcagattattatatatatatcatctgatcattcaaggaaatt |
193910 |
T |
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| Q |
301 |
aattaacaaattacgagagatgaatgagattaaaggaaaaatggggtgtgataat |
355 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
193911 |
aattaacaaattaagagagatgaatgagattaaagggaaaatggggtgtgataat |
193965 |
T |
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