View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2992_high_8 (Length: 343)
Name: NF2992_high_8
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 26211833 - 26211694
Alignment:
| Q |
19 |
aaaaccaggaacagaatggaagaaagaacctttggcaaacataaattcacattttctaagattctttagtaaggtaatgcatgtcttaaggtgtgtaaca |
118 |
Q |
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| T |
26211833 |
aaaaccaggaacagaatggaagaaagaacctttggcaaacataaattcacattttctaagattctttagtaaggtaatgcatgtcttaaggtgtgtaaca |
26211734 |
T |
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| Q |
119 |
cacgattctataccaagcatgcaaaataattctgtactaa |
158 |
Q |
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| T |
26211733 |
cacgattctataccaagcatgcaaaataattctgtactaa |
26211694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 221 - 325
Target Start/End: Complemental strand, 26211628 - 26211524
Alignment:
| Q |
221 |
tggtcggttgtttaatcatctttacctttaactttaacctcctctacaacatcatgtttatttaatgcttctttttcttcctcaaaacacaaaacattaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26211628 |
tggtcggttgtttaatcatctttacctttaactttaacctcctctacaacatcatgtttatttaatgcttctttttcttcctcaaaacacaaaacattaa |
26211529 |
T |
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| Q |
321 |
ccttt |
325 |
Q |
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||||| |
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| T |
26211528 |
ccttt |
26211524 |
T |
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