View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2992_low_11 (Length: 407)
Name: NF2992_low_11
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 217 - 397
Target Start/End: Complemental strand, 40952190 - 40952010
Alignment:
| Q |
217 |
atatatatattaaaatacattaattttaggaaaaactcctctaaacaaaacagagttctttatttattttttgaaatcatataatcagagaaaatttatt |
316 |
Q |
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| T |
40952190 |
atatatatattaaaatacattaattttaggaaaaaatcctctaaacaaaacagagttctttatttattttttgaaatcatataatcatagaaaatttatt |
40952091 |
T |
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| Q |
317 |
tttaattgtaagtgatttcaggaaaaataaaattttcatagtgttagaacaatgttctagaactaaatggcctattctgtg |
397 |
Q |
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| T |
40952090 |
tttaattgtaagtgatttcaggaaaaataaaattttcatagtgttagaacaatgttctagaactaaatggcctattctgtg |
40952010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 40952331 - 40952189
Alignment:
| Q |
18 |
aaaactcgtataaagatgtggtgttcctaccacttgtacaactgcttaaaatccaatgtgacaatcctatgaaattataggtatctcatcgtgatccaat |
117 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40952331 |
aaaactcatataaagatgtggtgttcgaaccacttgtacaactgcttaaaattcaatgtgacaatcctatgaaattataggtgtctcatcgtgatccaat |
40952232 |
T |
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| Q |
118 |
agtaaggagactcacatcgtgatccaatggatcatatatatat |
160 |
Q |
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| T |
40952231 |
agtagggagactcacatcgtgatccaatggatcatatatatat |
40952189 |
T |
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