View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2992_low_12 (Length: 405)
Name: NF2992_low_12
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 96 - 397
Target Start/End: Original strand, 8069973 - 8070274
Alignment:
| Q |
96 |
agaactcaatactcctcctattgtccaaatccaacaaattgcaaaaactccaacactgtttttcctcttaccaatgaagaaaatagatccatcagattga |
195 |
Q |
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| T |
8069973 |
agaactcaatactcctcctattgtccaaatccaacaaattgcaaaaaccccaacactgtttttcctcttaccaatgaagaaaatagatccatcagattga |
8070072 |
T |
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| Q |
196 |
ttattactttaaaagatgtcttattgaacatcacattataattactatcacacagttgacttatatgttcatatgattatgtttgagtctatctactaat |
295 |
Q |
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| T |
8070073 |
tgattactttaaaagatgtcttattgaacatcacattataattactatcacacagttgacttatatgttcatatgattatgtttgagtctatctactaat |
8070172 |
T |
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| Q |
296 |
aatatattacgaatggatgggaaatataagttaccaatagttcttgaaccaataatcttacctcttttagttgccttcaaaatccacaatgtcctctctg |
395 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||| ||||||| ||||||||||||||||||||||| |
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| T |
8070173 |
aatatattagtaatggatgggaaatataagttactaatagttcttgatccaatgatcttacctcgtttggttgcctccaaaatccacaatgtcctctctg |
8070272 |
T |
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| Q |
396 |
ct |
397 |
Q |
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|| |
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| T |
8070273 |
ct |
8070274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 8069899 - 8069927
Alignment:
| Q |
22 |
actattatcaaaacaaaaatgtaaaattg |
50 |
Q |
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| T |
8069899 |
actattatcaaaacaaaaatgtaaaattg |
8069927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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