View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2992_low_17 (Length: 268)
Name: NF2992_low_17
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 52721912 - 52721673
Alignment:
| Q |
19 |
agaatcgaatatgattatccaagaaagaaaagagtactgaccagtgagaattggtttcttgttgggatggaacggaagagagtgacggttgttgtgagcg |
118 |
Q |
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| T |
52721912 |
agaatcgaatatgattatccaagaaagaaaagagtactgaccagtgagaattggtttcttgttgggatggaacggaagagagtgacggttgttgtgagcg |
52721813 |
T |
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| Q |
119 |
gtggcggcaatgaccaatgtatcatactcatcagcaaaagcagattgaagcgcggtgtagattgttttccagaatttgagctgctgagagacattcacaa |
218 |
Q |
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| T |
52721812 |
gtggcggcaacgaccaatgtatcatactcatcagcaaaagcagattgaagcgcggtgtagattgttttccagaatttgagctgctgagagacattcacaa |
52721713 |
T |
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| Q |
219 |
acctcatagactccatcatctcacgagagtacttcttctt |
258 |
Q |
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| T |
52721712 |
acctcatagactccatcatctctcgagagtacttcttctt |
52721673 |
T |
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Back To:
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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 260
Target Start/End: Complemental strand, 32823112 - 32822983
Alignment:
| Q |
131 |
accaatgtatcatactcatcagcaaaagcagattgaagcgcggtgtagattgttttccagaatttgagctgctgagagacattcacaaacctcatagact |
230 |
Q |
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||||| |||||||| ||||||||||| | ||||||||| |||| ||||||| | |||||||||||| ||||| | |||||||||||||||| ||| | |
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| T |
32823112 |
accaacgtatcataatcatcagcaaaggaagattgaagtgcggcgtagattctattccagaatttgcactgctcggggacattcacaaacctcgtagctt |
32823013 |
T |
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| Q |
231 |
ccatcatctcacgagagtacttcttcttct |
260 |
Q |
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| T |
32823012 |
ccatcacctctcgagagtacttcttcttct |
32822983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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