View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2992_low_4 (Length: 749)
Name: NF2992_low_4
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 28 - 733
Target Start/End: Original strand, 43396205 - 43396913
Alignment:
| Q |
28 |
cagtgagatactgttatttttgaactgccaaa-----gagtaaaatatcttggtatagctgagattataattgaaggagaggggagagatttatatttca |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43396205 |
cagtgagatactgttatttttgaactgccaaattaaagagtaaaatatcttggtatagctgagattataattgaaggagaggggagagatttat--ttca |
43396302 |
T |
|
| Q |
123 |
atgctttgtttttggttgagaggaggtgaggggagataatagtgaattaaaattaggggtgtggttacgttgcgatctttgatattgcagacaaatgcag |
222 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43396303 |
atgctttgtttttggttgagagtaggctaggggagataatagtgaattaaaattaggggtgtggttgcgttgcgatctttgatattgcagacaaatgcag |
43396402 |
T |
|
| Q |
223 |
ttgatgcagatgcaatgtagctgcggagaccactaaagtcattatgttgtggtcgtgcatataattgttgacatcacacgggaaggagcaagatcttcca |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
43396403 |
ttgatgcagatgcaatgtagctgcggagaccactaaagtcattatgttgtggtcgtgcatatagttgttgacatcacacgggaaggagcgagatcttcca |
43396502 |
T |
|
| Q |
323 |
attccatctcaccaataaaattattaaaaagatacatctccaataattgaccacttgaagtttcttcattaattccccttctttcatctctccggcacac |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396503 |
attccatctcaccaataaaattattaaaaagatacatctccaataattgaccacttgaagtttcttcattaattccccttctttcatctctccggcacac |
43396602 |
T |
|
| Q |
423 |
cacattaaaatctccaagaatacaccactccccttcacctctattggcacgctcctccactaacgcctcccacatcctcctcttagccaccaaatcacat |
522 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43396603 |
cacattaaaatctccaagaatacaccacgccccttcacctctattagcacgctcctccactaacgcctcccacatcct-ctcttagccaccaaatcacat |
43396701 |
T |
|
| Q |
523 |
ttagaataaacattaaccacaatacatctcttcttcttca-cccacattcaaggcacacccccacatatccttccccttgaaaagaaaatagaaaatttg |
621 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
43396702 |
ttagaataaacattaaccacaatacatctcttcttcttcaccccccattcaaggcacacccccacatatccttccccttgaaaagaaaatcgaaaatttg |
43396801 |
T |
|
| Q |
622 |
cgcttgattttctccaaagagaaagaattccaccactatttccttccgacgctctaaacacccaatcacaatcttcaccaccccaaagagaataacataa |
721 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43396802 |
cgcttgattttctccaaagagaaagaattccaccactatttccttccgacgctctaaacgcccaatcacaatcttcaccaccccaaagagaataacataa |
43396901 |
T |
|
| Q |
722 |
agccggagttat |
733 |
Q |
| |
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|||||||||||| |
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| T |
43396902 |
agccggagttat |
43396913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 489 - 733
Target Start/End: Original strand, 8507639 - 8507884
Alignment:
| Q |
489 |
ctcccacatcctcctcttagccaccaaatcacatttagaataaacattaaccacaatacatctcttcttcttcac-ccacattcaaggcacacccccaca |
587 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| |||||||| ||||| | |||||||||||| | |||| ||| || || || | ||||| |||||| |
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| T |
8507639 |
ctcccacaacctccttttagccaccaaatcacacttagaatacacattgatcacaatacatctagtattctccacaccccaatctaaacacactcccaca |
8507738 |
T |
|
| Q |
588 |
tatccttccccttgaaaagaaaatagaaaatttgcgcttgattttctccaaagagaaagaattccaccactatttccttccgacgctctaaacacccaat |
687 |
Q |
| |
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|| ||||||||||||||||| || | | | | | ||||| ||||||| ||| ||||||||||||||||| ||||| || | ||||||| |||||| |
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| T |
8507739 |
taaccttccccttgaaaagagaacaattttgtagagttagatttcctccaaatagatagaattccaccactattaccttcggaaggtctaaactcccaat |
8507838 |
T |
|
| Q |
688 |
cacaatcttcaccaccccaaagagaataacataaagccggagttat |
733 |
Q |
| |
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||||||| |||| ||||| | |||||||| |||||||| ||||| |
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| T |
8507839 |
cacaatcatcacttccccacaaggaataacacaaagccggggttat |
8507884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 567 - 694
Target Start/End: Complemental strand, 25318447 - 25318320
Alignment:
| Q |
567 |
cattcaaggcacacccccacatatccttccccttgaaaagaaaatagaaaatttgcgcttgattttctccaaagagaaagaattccaccactatttcctt |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||| ||| || || | ||||| |||| |
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| T |
25318447 |
cattcaaggcacacccccacatatccttccccttgaaaagaaaaaaaaaaacaagcatttgattttctccaaatagataggatagccccactcgcacctt |
25318348 |
T |
|
| Q |
667 |
ccgacgctctaaacacccaatcacaatc |
694 |
Q |
| |
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| || ||||||||| ||||||||||||| |
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| T |
25318347 |
cggaagctctaaacgcccaatcacaatc |
25318320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 678
Target Start/End: Original strand, 9662531 - 9662633
Alignment:
| Q |
576 |
cacacccccacatatccttccccttgaaaagaaaatagaaaatttgcgcttgattttctccaaagagaaagaattccaccactatttccttccgacgctc |
675 |
Q |
| |
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|||||||| ||||||||||||| ||| || ||||||| || || || |||||||||||||||| ||||||||| || ||||| | ||||| ||||||| |
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| T |
9662531 |
cacacccctacatatccttccctttggaatgaaaataacaagttagcacttgattttctccaaatagaaagaataccctcactactaccttcggacgctc |
9662630 |
T |
|
| Q |
676 |
taa |
678 |
Q |
| |
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||| |
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|
| T |
9662631 |
taa |
9662633 |
T |
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