View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2992_low_5 (Length: 682)
Name: NF2992_low_5
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 438 - 672
Target Start/End: Complemental strand, 42569605 - 42569371
Alignment:
| Q |
438 |
ccaatcttactctctacatttatcatgnnnnnnnaagaagttaaattaggtcacccaaattgataaatttatcatatgttctttcatgagaccaccgtaa |
537 |
Q |
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| T |
42569605 |
ccaatcttactctctacatttatcatgtttttttaagaagttaaattaggccacccaaattgataaatttatcatatgttctttcatgagaccaccgtaa |
42569506 |
T |
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| Q |
538 |
ataagtactttgaccctaccaatatacataggttcgattgttaagggtttgactcatatgtcgtaagaacacgagttcaacgcatattgctggcgtaaaa |
637 |
Q |
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| T |
42569505 |
ataagtactttgaccctaccaatatacataggttcgattgttaagaatttgactcatccgtcgtaagaacacgagttcaacgcaagttgctggcgtaaaa |
42569406 |
T |
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| Q |
638 |
atcttgttggtcaacaatttgtaagtacctctctg |
672 |
Q |
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| T |
42569405 |
atcttgttggtcaacaatttgtaagtacctctctg |
42569371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 42569894 - 42569799
Alignment:
| Q |
49 |
atagaatgaagtgcggttctcgctgaattacatttccaaatgttcgccattttcgtagtgatttggcattctgagaccttctctacagcggaaacc |
144 |
Q |
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| T |
42569894 |
atagaatgaagtgcggttctcgctgaattacatttccaaatgttcgtcattttcgtagtgatttggtattctgagaccttctctacaacggaaacc |
42569799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 42576947 - 42576844
Alignment:
| Q |
38 |
aggaccggatgatagaatgaagtgcggttctcgctgaattacatttccaaatgttcgccattttcgtagtgatttggcattctgagaccttctctacagc |
137 |
Q |
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| T |
42576947 |
aggaccgggtaatagaacgaagtgcaactctcgctgaattagatttccaaatgcttgccattttcgt---gatttggcattctgagaccttctctgcaac |
42576851 |
T |
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| Q |
138 |
ggaaacc |
144 |
Q |
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| T |
42576850 |
ggaaacc |
42576844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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