View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2992_low_6 (Length: 525)
Name: NF2992_low_6
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 219 - 518
Target Start/End: Complemental strand, 714402 - 714096
Alignment:
| Q |
219 |
tgaacaaagaatatagcatgaattctataatacaactctctttgttctaattaggaagtattgttttattgtactaaggtaatagacatgtggtgtcaca |
318 |
Q |
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| T |
714402 |
tgaacaaagaatatagcatgaattctataatacaactctctttgttctaattaagaagtattgttttattgtactaagttaatagacatgtggagtcaca |
714303 |
T |
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| Q |
319 |
aactggaaacctcacttccctatccctgaagcaatagttgttcattttgtgaaaattgactggaagacatttaagactgcatcaaattattctagtcaca |
418 |
Q |
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| T |
714302 |
aactggaaacctcacttccctttcgctgaagcaatagttgtttattttgtgaaaattgactggaagacatttaagactgcatcaaattattctactcaca |
714203 |
T |
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| Q |
419 |
att----------aaattgattgataccttttccattattattacatataagattacaaacattctctttatttgccaatcacaatgctagagtgtgtgt |
508 |
Q |
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| T |
714202 |
attcatgtttaaaaaattgattgataccttttcc---attattacatataagattacaaacattctctttatttgccaatcacaatgctagagtgtgtgt |
714106 |
T |
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| Q |
509 |
agtattatgt |
518 |
Q |
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| T |
714105 |
agtattatgt |
714096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 820935 - 820730
Alignment:
| Q |
16 |
caattacaagcggtaatatctgctctgttcaactttcttaacattgagctgctttcaaagtcatcaaaataatcacgagtgtaacttcccaagtttatta |
115 |
Q |
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| T |
820935 |
caattacaagcggtaatatctgctctgttcaactttcttaacattgagctgctttcaaagtcatcaaaataatcacgagtgtaactttccaagtttatta |
820836 |
T |
|
| Q |
116 |
tattagatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataaagtctttcaaatgtagtgtttt |
215 |
Q |
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| T |
820835 |
tattagatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataatgtctttcaaatgtagtgtttt |
820736 |
T |
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| Q |
216 |
gagtga |
221 |
Q |
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|||||| |
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| T |
820735 |
gagtga |
820730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 810548 - 810477
Alignment:
| Q |
219 |
tgaacaaagaatatagcatgaattctataatacaactctctttgttctaattaggaagtattgttttattgt |
290 |
Q |
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| T |
810548 |
tgaacaaagaatatagcatgaattctataatacaactctctttgttctaattaggaagtattgttttattgt |
810477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 965765 - 965904
Alignment:
| Q |
26 |
cggtaatatctgctctgttcaactttcttaacattgagctgctttcaaagtcatcaaaataatcacgagtgtaacttcccaagtttattatattagatag |
125 |
Q |
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| T |
965765 |
cggtaatatctgctctgttcaactttcttagcattgagctgttttcaaagtcatcaaaagaatgatgagtgtaacatatgaagaagtttatgttagatag |
965864 |
T |
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| Q |
126 |
ttgaagatcttctagaactggacatgcgtctagaagcatc |
165 |
Q |
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| T |
965865 |
ttgaaggtcttcaagaactggacatccatctacaagcatc |
965904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 975036 - 975226
Alignment:
| Q |
28 |
gtaatatctgctctgttcaactttcttaacattgagctgctttcaaagtcatcaaaataatcacgagtgtaacttcccaagtttattatattagatagtt |
127 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||| | || | | || | || || ||||| | |||||| |
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| T |
975036 |
gtaatatctgctctgttcaatttttttaacattgagctgctttcaaagtcatcaagagaatgatgactctgacgtgtcatgt---atatataacatagtt |
975132 |
T |
|
| Q |
128 |
gaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataaagtctttcaaatgtagtgttttgagtga |
221 |
Q |
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| T |
975133 |
gaagatcttcaagaactggacatccatctagaagcatcataaaatcacgttgctgatcaaagtaaatctctttcaaatgtagggtttttagtga |
975226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 409721 - 409613
Alignment:
| Q |
113 |
ttatattagatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataaagtctttcaaatgtagtgt |
212 |
Q |
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| T |
409721 |
ttatattagacagttgaagatcttgaagaactggacatccatctagaagcataaaaaaatcagattgttgatggaagtagaagtctttcaaatgtagggt |
409622 |
T |
|
| Q |
213 |
tttgagtga |
221 |
Q |
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||||||||| |
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| T |
409621 |
tttgagtga |
409613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 1402898 - 1402791
Alignment:
| Q |
114 |
tatattagatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataaa-gtctttcaaatgtagtgt |
212 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| || ||||| | | | | || | ||| || | |||||||| |||||||||||||||||| |
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| T |
1402898 |
tatattagatagttgaagatcttcaagaagtggacatgcatccagaagaaacgtaaattcatgttgatgat-gaagataaatgtctttcaaatgtagtgt |
1402800 |
T |
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| Q |
213 |
tttgagtga |
221 |
Q |
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| T |
1402799 |
tttgagtga |
1402791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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