View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2992_low_7 (Length: 447)
Name: NF2992_low_7
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 108 - 432
Target Start/End: Original strand, 38750409 - 38750734
Alignment:
| Q |
108 |
gtagaactttttgcaactttgtcgaataagggtaagagaacatgtagctgctctgatcagagaaacataacaagttcaaagttatatgcatcaataattt |
207 |
Q |
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| T |
38750409 |
gtagaactatttgcaactttgtcgaataagggtaagagaacatgtagctgctctgatcagagaaacataacaagttcaaagttctatgcatcaataattt |
38750508 |
T |
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| Q |
208 |
aaataatcatattgtgaagcattatttgggagacactaatactgttatttatgttttataatcaaattattgagttacaataagtatacaactcttagtg |
307 |
Q |
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| T |
38750509 |
aaataatcaatttgtgaagcattatttgggagacactaatactgttatttatgttttataatcaaattattgagttacaataagtatacaactcttagtg |
38750608 |
T |
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| Q |
308 |
ttgcttccagtagttacttgaaagttctttgaagaataagtagcaaagaaaatttcccaattatggaattgaaggaaatggttgag-nnnnnnntatgat |
406 |
Q |
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| T |
38750609 |
ttgcttccagtagttacttgaaagttctttgaagaataagtagcaaagaaaatttcccaattatggaattgaaggaaatggttgagaaaaaaaatatgat |
38750708 |
T |
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| Q |
407 |
tgttgttaatcactattttatctgtg |
432 |
Q |
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| T |
38750709 |
tgttgttaatcactattttatctgtg |
38750734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 35142107 - 35142060
Alignment:
| Q |
57 |
gatccctttgtactttccgcaggaaaagtttgtctacgcatctccaat |
104 |
Q |
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| T |
35142107 |
gatcactttgtactttccacaggaaaagtttgtctaaacatctccaat |
35142060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 361
Target Start/End: Complemental strand, 3022091 - 3021739
Alignment:
| Q |
16 |
caatatcatgatctcaattactcgatcttacaacagaatttgatccctttgtactttccgcaggaaaagtttgtctacgcatctccaatccagtagaact |
115 |
Q |
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| T |
3022091 |
caatatcatgatcccaattacttgatcttacaatagaatttgatcactttgtacattccacaggaaaagtttgtctaagcatc-----tccagtagaact |
3021997 |
T |
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| Q |
116 |
ttttgcaactttgtcgaataagggtaagagaacatgtagctgctctgatcagagaaacat-aacaagttcaaagttatatgcatcaataatttaaataat |
214 |
Q |
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| T |
3021996 |
atttgcaactttgttgaagaagggtaagagaacatgtagctattctgataagagaaatataaacaagttcaaatttctatgtatcaataatttaaataat |
3021897 |
T |
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| Q |
215 |
catattgtgaagcattat-ttgggagacac---taatactgttatttatgttttataatcaaattattgagttacaataagtatacaactcttagtgttg |
310 |
Q |
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| T |
3021896 |
gaatttgtgaaacattatattgtgagacactattaatactgttatttatgttttataaacaaattattgggatacaacaagtataccatccttagtattg |
3021797 |
T |
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| Q |
311 |
c-------ttccagtagttacttgaaagttctttgaagaataagtagcaaagaaaatt |
361 |
Q |
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| T |
3021796 |
cttcatttttccagtagttacttgaaagttctttgaagattaagtagccaagaaaatt |
3021739 |
T |
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