View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2992_low_8 (Length: 438)

Name: NF2992_low_8
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2992_low_8
NF2992_low_8
[»] chr7 (30 HSPs)
chr7 (8-215)||(47487238-47487456)
chr7 (330-432)||(47489245-47489347)
chr7 (287-331)||(13816012-13816056)
chr7 (224-268)||(10595489-10595533)
chr7 (286-327)||(2433157-2433198)
chr7 (224-268)||(11909262-11909306)
chr7 (224-268)||(26153913-26153957)
chr7 (224-268)||(26154013-26154057)
chr7 (224-268)||(35160847-35160891)
chr7 (224-268)||(41699154-41699198)
chr7 (224-268)||(48135564-48135608)
chr7 (224-262)||(10595595-10595633)
chr7 (224-266)||(34118347-34118389)
chr7 (227-268)||(2738936-2738977)
chr7 (239-268)||(11909367-11909396)
chr7 (239-268)||(19673010-19673039)
chr7 (224-268)||(24166361-24166406)
chr7 (224-268)||(2927184-2927228)
chr7 (224-268)||(4027316-4027360)
chr7 (224-268)||(5082674-5082718)
chr7 (224-268)||(6580503-6580547)
chr7 (224-268)||(11677037-11677081)
chr7 (224-268)||(16810911-16810955)
chr7 (228-268)||(24936683-24936723)
chr7 (224-268)||(25250155-25250199)
chr7 (224-268)||(30005974-30006018)
chr7 (224-268)||(31857031-31857075)
chr7 (224-268)||(36399893-36399937)
chr7 (224-268)||(39976142-39976186)
chr7 (224-268)||(41890103-41890147)
[»] chr6 (12 HSPs)
chr6 (266-331)||(24044751-24044816)
chr6 (272-332)||(24041447-24041507)
chr6 (224-268)||(667726-667770)
chr6 (224-268)||(3343775-3343819)
chr6 (224-268)||(25363735-25363779)
chr6 (228-268)||(3418854-3418894)
chr6 (224-268)||(4156437-4156481)
chr6 (224-268)||(7498429-7498473)
chr6 (224-268)||(13902021-13902065)
chr6 (224-268)||(25363831-25363875)
chr6 (224-268)||(26575655-26575699)
chr6 (230-266)||(29938450-29938486)
[»] chr1 (21 HSPs)
chr1 (287-332)||(49387404-49387449)
chr1 (224-268)||(9947752-9947796)
chr1 (227-268)||(45748997-45749038)
chr1 (224-268)||(47418225-47418269)
chr1 (287-331)||(49390704-49390748)
chr1 (224-268)||(4974143-4974187)
chr1 (224-268)||(16427006-16427050)
chr1 (224-268)||(27146122-27146166)
chr1 (224-268)||(37215270-37215314)
chr1 (224-268)||(40907277-40907321)
chr1 (224-268)||(42788426-42788470)
chr1 (227-268)||(10008919-10008960)
chr1 (224-261)||(42140329-42140366)
chr1 (224-268)||(6792369-6792413)
chr1 (224-268)||(10008819-10008863)
chr1 (224-268)||(12993649-12993692)
chr1 (224-268)||(24023463-24023507)
chr1 (224-268)||(34038018-34038062)
chr1 (228-268)||(38847400-38847440)
chr1 (224-268)||(40094326-40094370)
chr1 (224-268)||(47912570-47912614)
[»] chr8 (14 HSPs)
chr8 (224-268)||(1647038-1647082)
chr8 (224-270)||(3270710-3270756)
chr8 (224-268)||(1647138-1647182)
chr8 (224-268)||(5420185-5420229)
chr8 (224-268)||(5420285-5420329)
chr8 (224-268)||(35201974-35202018)
chr8 (278-321)||(41279022-41279065)
chr8 (239-268)||(3611782-3611811)
chr8 (239-268)||(44081966-44081995)
chr8 (224-268)||(9331287-9331331)
chr8 (224-268)||(26489603-26489647)
chr8 (227-263)||(30538128-30538164)
chr8 (224-268)||(35063558-35063602)
chr8 (224-268)||(43844722-43844766)
[»] chr5 (29 HSPs)
chr5 (224-268)||(18753609-18753653)
chr5 (224-268)||(43176349-43176393)
chr5 (224-268)||(13359159-13359203)
chr5 (224-268)||(13461548-13461592)
chr5 (224-268)||(13461648-13461692)
chr5 (224-268)||(18753709-18753753)
chr5 (224-268)||(31690971-31691015)
chr5 (224-268)||(31691071-31691115)
chr5 (228-268)||(43176253-43176293)
chr5 (224-262)||(20502632-20502670)
chr5 (224-268)||(3780978-3781022)
chr5 (224-268)||(13420532-13420576)
chr5 (224-268)||(34102073-34102117)
chr5 (224-268)||(34186453-34186497)
chr5 (224-268)||(34820623-34820667)
chr5 (224-268)||(38404146-38404190)
chr5 (224-268)||(38860898-38860942)
chr5 (239-268)||(3709482-3709511)
chr5 (239-268)||(8408804-8408833)
chr5 (239-268)||(38860813-38860842)
chr5 (235-268)||(40914122-40914155)
chr5 (224-268)||(5787477-5787521)
chr5 (224-268)||(9087604-9087648)
chr5 (224-268)||(11380284-11380328)
chr5 (224-268)||(18942084-18942128)
chr5 (224-268)||(21344547-21344591)
chr5 (224-268)||(23592083-23592127)
chr5 (224-268)||(37039790-37039834)
chr5 (224-268)||(39148556-39148600)
[»] chr3 (21 HSPs)
chr3 (224-268)||(24226204-24226248)
chr3 (224-268)||(17004956-17005000)
chr3 (224-268)||(17056605-17056649)
chr3 (217-268)||(40760762-40760813)
chr3 (224-268)||(24226304-24226348)
chr3 (224-268)||(29726372-29726416)
chr3 (224-268)||(29726464-29726508)
chr3 (224-268)||(29726556-29726600)
chr3 (224-268)||(46967555-46967599)
chr3 (224-268)||(54008305-54008349)
chr3 (227-268)||(32956419-32956460)
chr3 (224-268)||(17501403-17501447)
chr3 (224-268)||(17940186-17940230)
chr3 (224-268)||(25995640-25995684)
chr3 (228-268)||(28811612-28811652)
chr3 (224-268)||(29352826-29352870)
chr3 (224-268)||(29726288-29726332)
chr3 (224-268)||(33639012-33639056)
chr3 (224-268)||(37331697-37331741)
chr3 (224-268)||(39333288-39333332)
chr3 (224-268)||(40326536-40326580)
[»] chr2 (25 HSPs)
chr2 (224-266)||(33052140-33052182)
chr2 (224-268)||(4184723-4184767)
chr2 (287-331)||(10937861-10937905)
chr2 (287-331)||(10941222-10941266)
chr2 (287-331)||(10947091-10947135)
chr2 (224-268)||(32514866-32514910)
chr2 (225-268)||(5094839-5094882)
chr2 (224-265)||(35567146-35567187)
chr2 (224-268)||(20556684-20556728)
chr2 (224-268)||(33363657-33363701)
chr2 (224-268)||(42230620-42230664)
chr2 (233-268)||(4184823-4184858)
chr2 (224-263)||(18967222-18967261)
chr2 (224-266)||(5773776-5773818)
chr2 (224-262)||(32514972-32515010)
chr2 (224-261)||(14152188-14152225)
chr2 (224-261)||(31619769-31619806)
chr2 (224-268)||(4101946-4101990)
chr2 (224-268)||(5773876-5773920)
chr2 (224-268)||(26759114-26759158)
chr2 (224-268)||(29573812-29573856)
chr2 (224-268)||(35567236-35567280)
chr2 (224-268)||(42230520-42230564)
chr2 (224-268)||(44949340-44949384)
chr2 (224-268)||(44949440-44949484)
[»] scaffold0047 (2 HSPs)
scaffold0047 (224-268)||(66018-66062)
scaffold0047 (224-268)||(65918-65962)
[»] chr4 (19 HSPs)
chr4 (224-268)||(8014181-8014225)
chr4 (224-268)||(20787554-20787598)
chr4 (224-268)||(34709673-34709717)
chr4 (224-268)||(18592343-18592387)
chr4 (224-268)||(20787654-20787698)
chr4 (224-268)||(23795576-23795620)
chr4 (224-268)||(24156137-24156181)
chr4 (239-268)||(44495769-44495798)
chr4 (239-268)||(46495546-46495575)
chr4 (224-268)||(11347117-11347161)
chr4 (224-268)||(18327932-18327976)
chr4 (224-268)||(18437423-18437467)
chr4 (224-268)||(27628468-27628512)
chr4 (224-268)||(34166110-34166154)
chr4 (224-268)||(34595780-34595824)
chr4 (224-268)||(34709573-34709617)
chr4 (224-268)||(44495688-44495732)
chr4 (224-268)||(48088093-48088137)
chr4 (224-268)||(49632315-49632359)
[»] scaffold0136 (1 HSPs)
scaffold0136 (224-268)||(22442-22486)
[»] scaffold0121 (1 HSPs)
scaffold0121 (228-268)||(17532-17572)
[»] scaffold0009 (1 HSPs)
scaffold0009 (224-268)||(49761-49805)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 47487238 - 47487456
Alignment:
Q  8 atatacggatatgatatgattcgcacattcatttgttcacaaacaagacatcaatgactattcgttggcaaggcttatgggctatgatggctgctttaat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47487238 atatacggatatgatatgattcgcacattcatttgttcacaaacaagacatcaatgactattcgttggcaaggcttatgggctatggtggctgctttaat 47487337  T
Q  108 ttgtgatatatcg---------------------atgtctttaccttccatactggtcaattatgattggctttcaaaaaggaaagtggaacaaagtggg 186  Q
    |||||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||    
T  47487338 ttgtgatatatcgatcgtcactcagtatgtcactatgtctttaccttccatactggtcaattatgattggctttcaaaaagg----------aaagtggg 47487427  T
Q  187 gtatgtcactatgtttctttttccatcat 215  Q
    |||||||||||||||||||||||||||||    
T  47487428 gtatgtcactatgtttctttttccatcat 47487456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 330 - 432
Target Start/End: Original strand, 47489245 - 47489347
Alignment:
Q  330 catattaatcccttaaaatcactttttattccgtacactccaaagaacataccacttgaattatttcattatcagtctgcataatgacatgttacagcca 429  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47489245 catattaatcccttcaaatcactttttattcagtacactccaaagaacataccacttgaattatttcattatcagtctgcataatgacatgttacagcca 47489344  T
Q  430 ctc 432  Q
    |||    
T  47489345 ctc 47489347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 13816012 - 13816056
Alignment:
Q  287 attgaatattatttctagagataatttatgcctaattttactaca 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13816012 attgaatattatttctagagataatttatgcctaattttactaca 13816056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 10595489 - 10595533
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  10595489 ctccctccgtattttaatataagtaaaattgattttttaggttca 10595533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 2433157 - 2433198
Alignment:
Q  286 aattgaatattatttctagagataatttatgcctaattttac 327  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  2433157 aattgattattatttttagagataatttatgcctaattttac 2433198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 11909262 - 11909306
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||    
T  11909262 ctccctccgttttttaatataagcaaaattgactttttaagttca 11909306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 26153913 - 26153957
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||    
T  26153913 ctccctccgttttttaatataaacaaaattgactttttaggttca 26153957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 26154057 - 26154013
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  26154057 ctccctccgtctttaaatataagcaaaattgactttttaggttca 26154013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 35160891 - 35160847
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  35160891 ctccctccgtttttaaatataagcaaaattgactttttaggttca 35160847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 41699198 - 41699154
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||| ||||||||||||||||| ||||||||| ||||||||||||    
T  41699198 ctccttccgtattttaatataaacaaaattgaatttttaggttca 41699154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 48135608 - 48135564
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| || |||||||||||||||||||||||||||| |||||    
T  48135608 ctccctctgttttttaatataagcaaaattgattttttatgttca 48135564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 10595633 - 10595595
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgatttttta 262  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  10595633 ctccctccgtattttaatataagtaaaattgacttttta 10595595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 34118347 - 34118389
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggtt 266  Q
    |||||||||||||| || |||||||||||||| ||||||||||    
T  34118347 ctccctccgtatttaaaaataagcaaaattgactttttaggtt 34118389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 2738977 - 2738936
Alignment:
Q  227 cctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||    
T  2738977 cctccgttttttaatataaacaaaattgattttttagattca 2738936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 11909396 - 11909367
Alignment:
Q  239 aatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||||||||||    
T  11909396 aatataagcaaaattgattttttaggttca 11909367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 19673039 - 19673010
Alignment:
Q  239 aatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||||||||||    
T  19673039 aatataagcaaaattgattttttaggttca 19673010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 24166406 - 24166361
Alignment:
Q  224 ctccctccgtattttaa-tataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||||    
T  24166406 ctccctccgtattttaaatataaacaaaattgattttttaagttca 24166361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 2927184 - 2927228
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||||    
T  2927184 ctccctccgttttaaaatataagcaaaattcattttttaggttca 2927228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 4027360 - 4027316
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||||    
T  4027360 ctccatccgtttttaaatataagcaaaattgaatttttaggttca 4027316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 5082674 - 5082718
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| |||||| |||||    
T  5082674 ctccctccgtctttaaatataagcaaaattgactttttaagttca 5082718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 6580503 - 6580547
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||||||||||||||||  |||||||||||    
T  6580503 ctccctccgtttttaaatataagcaaaattgacattttaggttca 6580547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 11677081 - 11677037
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| | ||||||||||||| ||||||||||||||    
T  11677081 ctccctccgtttttaattataagcaaaattaattttttaggttca 11677037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 16810955 - 16810911
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||||    
T  16810955 ctccctccgttttaaaatataagcaaaattcattttttaggttca 16810911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 24936683 - 24936723
Alignment:
Q  228 ctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||| ||| ||||||||||||||||||||||||| ||||    
T  24936683 ctccgtttttaaatataagcaaaattgattttttagattca 24936723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 25250155 - 25250199
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||| | ||||||||||||||||||||| ||||||| ||||    
T  25250155 ctccctccatcttttaatataagcaaaattgactttttagattca 25250199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 30006018 - 30005974
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||   ||||||||||||||||| ||||||||||||    
T  30006018 ctccctccgtatgaaaatataagcaaaattgactttttaggttca 30005974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 31857031 - 31857075
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||| |||||||||||||||| |||||    
T  31857031 ctccctccgtctttaaatataatcaaaattgattttttaagttca 31857075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 36399893 - 36399937
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||||    
T  36399893 ctccttccgtctttaaatataagcaaaattgactttttaggttca 36399937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 39976186 - 39976142
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| || |||||||||||||||||||||| ||||    
T  39976186 ctccctccgtttttaaacataagcaaaattgattttttagattca 39976142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 41890147 - 41890103
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||| ||||| ||| ||| ||||||||||||||||||||||||||    
T  41890147 ctccatccgtctttaaatttaagcaaaattgattttttaggttca 41890103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 24044816 - 24044751
Alignment:
Q  266 tcactattttgcttatatttaattgaatattatttctagagataatttatgcctaattttactaca 331  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24044816 tcactcttttgcttatatttaattgaatattatttctagagataatttatgcctaattttactaca 24044751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 24041507 - 24041447
Alignment:
Q  272 ttttgcttatatttaattgaatattatttctagagataatttatgcctaattttactacat 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24041507 ttttgcttatatttaattgaatattatttctagagataatttatgcctaattttactacat 24041447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 667726 - 667770
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||    
T  667726 ctccctccgtttttaaatataagcaaaattgattttttaggttca 667770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 3343775 - 3343819
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||    
T  3343775 ctccctccgtttttaaatataagcaaaaatgattttttaggttca 3343819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 25363735 - 25363779
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||    
T  25363735 ctccttccgtttttaaatataagcaaaattgattttttaggttca 25363779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 3418894 - 3418854
Alignment:
Q  228 ctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||| ||| ||||||||||||||||| ||||||||||||    
T  3418894 ctccgtttttaaatataagcaaaattgactttttaggttca 3418854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 4156481 - 4156437
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||||    
T  4156481 ctccctccatttttaaatataagcaaaattgactttttaggttca 4156437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 7498429 - 7498473
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||||||| |||||||| ||||||||||||    
T  7498429 ctccctccgtttttaaatataagtaaaattgactttttaggttca 7498473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 13902021 - 13902065
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||||    
T  13902021 ctccatccgtttttaaatataagcaaaattgactttttaggttca 13902065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 25363875 - 25363831
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||| |||||||||||| ||||||||||||    
T  25363875 ctccctccgtttttaaatacaagcaaaattgactttttaggttca 25363831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 26575655 - 26575699
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||| ||||||||||||||||| ||||    
T  26575655 ctccctccgtttttaaatataaacaaaattgattttttagattca 26575699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 29938486 - 29938450
Alignment:
Q  230 ccgtattttaatataagcaaaattgattttttaggtt 266  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  29938486 ccgtttttaaatataagcaaaattgattttttaggtt 29938450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 49387449 - 49387404
Alignment:
Q  287 attgaatattatttctagagataatttatgcctaattttactacat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  49387449 attgaatattatttctagagataatttatgcctaattttactacat 49387404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 9947752 - 9947796
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  9947752 ctccctccgttttttaatataagcaaaattgattttttaggttca 9947796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 45748997 - 45749038
Alignment:
Q  227 cctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  45748997 cctccgttttttaatataagcaaaattgattttttaggttca 45749038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 47418269 - 47418225
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  47418269 ctccctccgttttttaatataagcaaaattgtttttttaggttca 47418225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 49390748 - 49390704
Alignment:
Q  287 attgaatattatttctagagataatttatgcctaattttactaca 331  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  49390748 attgaatattatttctagagataatttatgccaaatttttctaca 49390704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 4974187 - 4974143
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||    
T  4974187 ctccctccgttttttaatataagcaaaattgactttttagattca 4974143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 16427050 - 16427006
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||||||||||| ||||    
T  16427050 ctccctccgtttttaaatataagcaaaattgattttttagattca 16427006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 27146166 - 27146122
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  27146166 ctccctccgtttttaaatataagcaaaattgactttttaggttca 27146122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 37215314 - 37215270
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| |||||||| |||||||||||| ||||||||||||    
T  37215314 ctccctccgttttttaatacaagcaaaattgactttttaggttca 37215270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 40907321 - 40907277
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||||    
T  40907321 ctccctccgtatttaaatataatcaaaattgactttttaggttca 40907277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 42788470 - 42788426
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||||    
T  42788470 ctccctccatatttaaatataagcaaaattgattttttagattca 42788426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 10008960 - 10008919
Alignment:
Q  227 cctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| ||| |||||||||||||||||| |||||||||||    
T  10008960 cctccgtttttaaatataagcaaaattgatgttttaggttca 10008919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 42140329 - 42140366
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgatttttt 261  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  42140329 ctccctccgtttttaaatataagcaaaattgatttttt 42140366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 6792369 - 6792413
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  6792369 ctccctccgtttttaaatataagcaaaattgactttttagattca 6792413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 10008819 - 10008863
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| | | |||||||| |||||||||||||||||||||    
T  10008819 ctccctccgtttctaaatataagtaaaattgattttttaggttca 10008863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 12993692 - 12993649
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||    
T  12993692 ctccctccgtattt-aatataagcaaatttgactttttaggttca 12993649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 24023507 - 24023463
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||| | ||||||||||||    
T  24023507 ctccctccgtttttaaatataagcaaaattaactttttaggttca 24023463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 34038062 - 34038018
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||  |||||||| |||||||| ||||||||||||    
T  34038062 ctccctccgtattaaaatataagtaaaattgactttttaggttca 34038018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 38847440 - 38847400
Alignment:
Q  228 ctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||| ||| ||||||||||||||||| ||||||||||||    
T  38847440 ctccgtttttaaatataagcaaaattgactttttaggttca 38847400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 40094326 - 40094370
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  40094326 ctccctccgtgtttaaatataagcaaaattgactttttagattca 40094370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 47912570 - 47912614
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| | | ||||||||||||||||| ||||||||||||    
T  47912570 ctccctccgtttctaaatataagcaaaattgactttttaggttca 47912614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 1647038 - 1647082
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  1647038 ctccctccgtattttaatataagcaaaatttattttttaggttca 1647082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 3270756 - 3270710
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttcact 270  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  3270756 ctccctccgtcttttaatataagcaaaattgactttttaggttcact 3270710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 1647182 - 1647138
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  1647182 ctccctccgtattttaatataagtaaaattgactttttaggttca 1647138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 5420185 - 5420229
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||    
T  5420185 ctccctcagtattttaatataagtaaaattgattttttaggttca 5420229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 5420329 - 5420285
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||| ||||||||||||||||||||||| ||||||| ||||    
T  5420329 ctccctccatattttaatataagcaaaattgactttttagattca 5420285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 35202018 - 35201974
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  35202018 ctccctccgtttttaaatataagcaaaattgaatttttaggttca 35201974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 41279065 - 41279022
Alignment:
Q  278 ttatatttaattgaatattatttctagagataatttatgcctaa 321  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||    
T  41279065 ttatattttattgattattatttttagagataatttatgcctaa 41279022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 3611782 - 3611811
Alignment:
Q  239 aatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||||||||||    
T  3611782 aatataagcaaaattgattttttaggttca 3611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 44081966 - 44081995
Alignment:
Q  239 aatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||||||||||    
T  44081966 aatataagcaaaattgattttttaggttca 44081995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 9331287 - 9331331
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||  ||||||| ||||||||||||||||||||||    
T  9331287 ctccctccgttttgaaatataaacaaaattgattttttaggttca 9331331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 26489603 - 26489647
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| || ||| ||||||||||||||| ||||||||||||||    
T  26489603 ctccctctgtttttaaatataagcaaaatttattttttaggttca 26489647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 30538164 - 30538128
Alignment:
Q  227 cctccgtattttaatataagcaaaattgattttttag 263  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  30538164 cctccgttttttaatataagcaaaattaattttttag 30538128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 35063602 - 35063558
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||   ||||||||||||||||| ||||||||||||    
T  35063602 ctccctccgtatcaaaatataagcaaaattgactttttaggttca 35063558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 43844722 - 43844766
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||||||||||||||| |||||||| ||||    
T  43844722 ctccctccgtttttaaatataagcaaaattggttttttagattca 43844766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 18753609 - 18753653
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  18753609 ctccctccgtattttaatataagcaaaattgactttttaggttca 18753653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 43176393 - 43176349
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  43176393 ctccctccgtattttaatataagcaaaattgactttttaggttca 43176349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 13359159 - 13359203
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||    
T  13359159 ctccctccgttttttaatataagcaaaattgactttttaggttca 13359203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 13461548 - 13461592
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||    
T  13461548 ctccctccgtatttaaatataagcaaaattgactttttaggttca 13461592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 13461692 - 13461648
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||    
T  13461692 ctccctccgttttttaatataagcaaaattgactttttaggttca 13461648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 18753753 - 18753709
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||    
T  18753753 ctccctctgtattttaatataagcaaaattgactttttaggttca 18753709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 31690971 - 31691015
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  31690971 ctccctccgtattttaatataagcaaaattgactttttaagttca 31691015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 31691115 - 31691071
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||    
T  31691115 ctcccttcgtattttaatataagcaaaattgactttttaggttca 31691071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 43176253 - 43176293
Alignment:
Q  228 ctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  43176253 ctccgtattttaatataagtaaaattgattttttaggttca 43176293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 20502670 - 20502632
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgatttttta 262  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  20502670 ctccctccgtattttaatataagcaaaattgacttttta 20502632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 3780978 - 3781022
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  3780978 ctccctccgtctttaaatataagcaaaattgactttttaggttca 3781022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 13420576 - 13420532
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||||||||||| |||||||||||||||||    
T  13420576 ctccctccgtttttaaatataagcaaatttgattttttaggttca 13420532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 34102073 - 34102117
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||    
T  34102073 ctccctccgtttttaaatataagcaaaatttattttttaggttca 34102117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 34186497 - 34186453
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  34186497 ctccctccgtttttaaatataagcaaaattgagtttttaggttca 34186453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 34820623 - 34820667
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||    
T  34820623 ctccttccgtattttaatataagcaaaattaattttttaagttca 34820667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 38404146 - 38404190
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||    
T  38404146 ctccctccgtctttaaatataagtaaaattgattttttaggttca 38404190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 38860942 - 38860898
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||    
T  38860942 ctccctccgtttttaaatataagcaaaattgatttttttggttca 38860898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 3709511 - 3709482
Alignment:
Q  239 aatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||||||||||    
T  3709511 aatataagcaaaattgattttttaggttca 3709482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 8408804 - 8408833
Alignment:
Q  239 aatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||||||||||    
T  8408804 aatataagcaaaattgattttttaggttca 8408833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 38860813 - 38860842
Alignment:
Q  239 aatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||||||||||    
T  38860813 aatataagcaaaattgattttttaggttca 38860842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 40914122 - 40914155
Alignment:
Q  235 ttttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||| ||||||||||||    
T  40914122 ttttaatataagcaaaattgactttttaggttca 40914155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 5787477 - 5787521
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| |||||| |||||    
T  5787477 ctccctccgtctttaaatataagcaaaattgactttttaagttca 5787521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 9087648 - 9087604
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||||    
T  9087648 ctccttccgtttttaaatataagcaaaattgactttttaggttca 9087604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 11380328 - 11380284
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| || ||| ||||||||||||||||| ||||||||||||    
T  11380328 ctccctcggtttttaaatataagcaaaattgactttttaggttca 11380284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 18942128 - 18942084
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||| | |||||||||||| || ||||||||||||||    
T  18942128 ctccctccgtatctaaatataagcaaattttattttttaggttca 18942084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 21344591 - 21344547
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  21344591 ctccctccgtctttaaatataagcaaaattgactttttagattca 21344547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 23592127 - 23592083
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| || ||| ||||||||||||||||| ||||||||||||    
T  23592127 ctccctctgtttttaaatataagcaaaattgactttttaggttca 23592083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 37039834 - 37039790
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||| | ||||||||||||    
T  37039834 ctccctccgtttttaaatataagcaaaattaaatttttaggttca 37039790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 39148600 - 39148556
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||||    
T  39148600 ctccctccgttttaaaatataagcaaaatttattttttaggttca 39148556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 24226204 - 24226248
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  24226204 ctccctccgtattttaatataagcaaaatggattttttaggttca 24226248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 17004956 - 17005000
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||    
T  17004956 ctccctccgtttttaaatataagcaaaattgattttttaggttca 17005000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 17056649 - 17056605
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  17056649 ctccctccgtattttaatataagcaaaattaactttttaggttca 17056605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 40760762 - 40760813
Alignment:
Q  217 gtactccctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||| | | |||||||| |||||||||||||||||||||    
T  40760762 gtactccctccctccgtttctaaatataagtaaaattgattttttaggttca 40760813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 24226348 - 24226304
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||| ||||||||||||||||| ||||||||| ||||||||||||    
T  24226348 ctccttccgtattttaatataaacaaaattgactttttaggttca 24226304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 29726416 - 29726372
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  29726416 ctccctccgtctttaaatataagcaaaattgactttttaggttca 29726372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 29726508 - 29726464
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  29726508 ctccctccgtctttaaatataagcaaaattgactttttaggttca 29726464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 29726600 - 29726556
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  29726600 ctccctccgtctttaaatataagcaaaattgactttttaggttca 29726556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 46967599 - 46967555
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  46967599 ctccctccgtctttaaatataagcaaaattgactttttaggttca 46967555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 54008349 - 54008305
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  54008349 ctccctccgtttttaaatataagcaaaattgactttttaggttca 54008305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 32956419 - 32956460
Alignment:
Q  227 cctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||    
T  32956419 cctccgtttttaaatataagcaaaattgactttttaggttca 32956460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 17501403 - 17501447
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||  |||||||| |||||||||||||||| ||||    
T  17501403 ctccctccgtattaaaatataagtaaaattgattttttagcttca 17501447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 17940186 - 17940230
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||| | ||||||||||||    
T  17940186 ctccctccgtttttaaatataagcaaaatttactttttaggttca 17940230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 25995684 - 25995640
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||||||||||| |||| ||||||||||||    
T  25995684 ctccctccgtttttaaatataagcaaatttgactttttaggttca 25995640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 28811652 - 28811612
Alignment:
Q  228 ctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||| ||| |||||||| |||||||||||||||||||||    
T  28811652 ctccgtctttaaatataagtaaaattgattttttaggttca 28811612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 29352870 - 29352826
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||||||| |||||| ||||||||||||||    
T  29352870 ctccctccgtttttaaatataagtaaaatttattttttaggttca 29352826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 29726288 - 29726332
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||| | ||| ||||||||||||||||| ||||||||||||    
T  29726288 ctccctccatgtttaaatataagcaaaattgactttttaggttca 29726332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 33639056 - 33639012
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||| | ||||||||||||    
T  33639056 ctccctccgtttttaaatataagcaaaattcactttttaggttca 33639012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 37331741 - 37331697
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| || ||| ||||||||||||||||| ||||||||||||    
T  37331741 ctccctctgtctttaaatataagcaaaattgactttttaggttca 37331697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 39333288 - 39333332
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||||    
T  39333288 ctccctccgttttaaaatataagcaaaattcattttttaggttca 39333332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 40326580 - 40326536
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||   ||||||||||||||||| ||||||||||||    
T  40326580 ctccctccgtatcaaaatataagcaaaattgactttttaggttca 40326536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 33052140 - 33052182
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggtt 266  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  33052140 ctccctccgttttttaatataagcaaaattgattttttaggtt 33052182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 4184723 - 4184767
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  4184723 ctccctccgtattttaatataagcaaaattgactttttatgttca 4184767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 10937905 - 10937861
Alignment:
Q  287 attgaatattatttctagagataatttatgcctaattttactaca 331  Q
    |||||||||||||||||||||||||||||||||||| || |||||    
T  10937905 attgaatattatttctagagataatttatgcctaatctttctaca 10937861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 10941266 - 10941222
Alignment:
Q  287 attgaatattatttctagagataatttatgcctaattttactaca 331  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  10941266 attgaatattatttctagagataatttatgccaaatttttctaca 10941222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 10947135 - 10947091
Alignment:
Q  287 attgaatattatttctagagataatttatgcctaattttactaca 331  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  10947135 attgaatattatttctagagataatttatgccaaatttttctaca 10947091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 32514866 - 32514910
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  32514866 ctccctccgtattttaatataaataaaattgattttttaggttca 32514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 5094839 - 5094882
Alignment:
Q  225 tccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||    
T  5094839 tccctccgttttttaatataagcaaaattgactttttaggttca 5094882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 35567146 - 35567187
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggt 265  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  35567146 ctccctccgtttttaaatataagcaaaattgattttttaggt 35567187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 20556728 - 20556684
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||    
T  20556728 ctccctccgttttcaaatataagcaaaattgattttttaggttca 20556684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 33363701 - 33363657
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  33363701 ctccctccgtctttaaatataagcaaaattgactttttaggttca 33363657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 42230664 - 42230620
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||    
T  42230664 ctccctccgttttttaatataagcaaaattgactttttatgttca 42230620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 4184858 - 4184823
Alignment:
Q  233 tattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4184858 tattttaatataagcaaaattgactttttaggttca 4184823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 18967222 - 18967261
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttag 263  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  18967222 ctccctccgtatttaaatataagtaaaattgattttttag 18967261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 5773776 - 5773818
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggtt 266  Q
    |||| |||||||||||||||||| |||||||| ||||||||||    
T  5773776 ctccatccgtattttaatataagaaaaattgactttttaggtt 5773818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 32515010 - 32514972
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgatttttta 262  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  32515010 ctccctccgtattttattataagcaaaattaatttttta 32514972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 14152188 - 14152225
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgatttttt 261  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  14152188 ctccctccgtttttaaatataagcaaaattgatttttt 14152225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 31619769 - 31619806
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgatttttt 261  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  31619769 ctccttccgttttttaatataagcaaaattgatttttt 31619806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 4101946 - 4101990
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||||||| |||||||| ||||||||||||    
T  4101946 ctccctccgtttttaaatataagtaaaattgactttttaggttca 4101990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 5773920 - 5773876
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||| |||||||||||||| |||||||| |||||| |||||    
T  5773920 ctccctccatattttaatataagtaaaattgactttttaagttca 5773876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 26759158 - 26759114
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||||    
T  26759158 ctccctccgtctttaaatttaagcaaaattgactttttaggttca 26759114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 29573812 - 29573856
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  29573812 ctccctccgtttttaaatataagcaaaattgactttttagattca 29573856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 35567280 - 35567236
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||||||| |||||||||||||||| ||||    
T  35567280 ctccctccgtttttaaatataagtaaaattgattttttagattca 35567236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 42230520 - 42230564
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  42230520 ctccctccgtctttaaatataagcaaaattgactttttagattca 42230564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 44949340 - 44949384
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| | | ||||||||||||||||| ||||||||||||    
T  44949340 ctccctccgtttctaaatataagcaaaattgactttttaggttca 44949384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 44949484 - 44949440
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||| |||||||| |||||    
T  44949484 ctccctccgtttttaaatataagcaaaatttattttttaagttca 44949440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 66062 - 66018
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  66062 ctccctccgtgttttaatataagcaaaattgattttttagattca 66018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 65918 - 65962
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||| ||||||||||||||| | ||||||| ||||    
T  65918 ctccctccgtatttaaatataagcaaaatttactttttagattca 65962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 8014181 - 8014225
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||    
T  8014181 ctccctccgtatttaaatataagcaaaattgactttttaggttca 8014225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 20787554 - 20787598
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||    
T  20787554 ctccctctgtattttaatataagcaaaattgactttttaggttca 20787598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 34709717 - 34709673
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||    
T  34709717 ctccctccgttttttaatataagcaaaattgactttttaggttca 34709673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 18592343 - 18592387
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  18592343 ctccctccgtttttaaatataagcaaaattgactttttaggttca 18592387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 20787698 - 20787654
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||    
T  20787698 ctccctccgtattttaatataagtaaaattgactttttagattca 20787654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 23795576 - 23795620
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||    
T  23795576 ctccctctgtctttaaatataagcaaaattgattttttaggttca 23795620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 24156137 - 24156181
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  24156137 ctccctccgtttttaaatataagcaaaattgactttttaggttca 24156181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 44495798 - 44495769
Alignment:
Q  239 aatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||||||||||    
T  44495798 aatataagcaaaattgattttttaggttca 44495769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 46495546 - 46495575
Alignment:
Q  239 aatataagcaaaattgattttttaggttca 268  Q
    ||||||||||||||||||||||||||||||    
T  46495546 aatataagcaaaattgattttttaggttca 46495575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 11347117 - 11347161
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||| ||||| ||| ||||||||||||||| ||||||||||||||    
T  11347117 ctccatccgtttttaaatataagcaaaatttattttttaggttca 11347161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 18327932 - 18327976
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| |||||||||||  |||||||| ||||||||||||    
T  18327932 ctccctccgttttttaatataaataaaattgactttttaggttca 18327976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 18437467 - 18437423
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| |||||||||||  |||||||| ||||||||||||    
T  18437467 ctccctccgttttttaatataaataaaattgactttttaggttca 18437423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 27628512 - 27628468
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||||||| |||||| ||||||||||||||    
T  27628512 ctccctccgtttttaaatataagtaaaatttattttttaggttca 27628468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 34166110 - 34166154
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| | | ||||||||||||||||| ||||||||||||    
T  34166110 ctccctccgtttctaaatataagcaaaattgactttttaggttca 34166154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 34595824 - 34595780
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||    
T  34595824 ctccctccgtttttaaatataaacaaaattgactttttaggttca 34595780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 34709573 - 34709617
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||||||| ||||||||||||||| | ||||||| ||||    
T  34709573 ctccctccgtatttaaatataagcaaaatttactttttagattca 34709617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 44495688 - 44495732
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| |||||||||||| |||| ||||||||||||    
T  44495688 ctccctccgtttttaaatataagcaaatttgactttttaggttca 44495732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 48088137 - 48088093
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| |||||| |||||    
T  48088137 ctccctccgtttttaaatataagcaaaattgactttttatgttca 48088093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 49632315 - 49632359
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||||    
T  49632315 ctccatccgtctttaaatataagcaaaattgactttttaggttca 49632359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 22442 - 22486
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| ||| ||||||||||||||||| ||| ||||||||    
T  22442 ctccctccgtttttaaatataagcaaaattgactttgtaggttca 22486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 17572 - 17532
Alignment:
Q  228 ctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||| ||| ||||||||||||||||| ||||||||||||    
T  17572 ctccgtttttaaatataagcaaaattgactttttaggttca 17532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 49805 - 49761
Alignment:
Q  224 ctccctccgtattttaatataagcaaaattgattttttaggttca 268  Q
    |||||||||| |||||||||||| |||||||| ||||| ||||||    
T  49805 ctccctccgttttttaatataagtaaaattgacttttttggttca 49761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University