View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2992_low_9 (Length: 423)
Name: NF2992_low_9
Description: NF2992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2992_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 410
Target Start/End: Complemental strand, 28639235 - 28638836
Alignment:
| Q |
13 |
tgatatggacaaaattaactgacgttgtggtcgctgannnnnnnataaggcactcataactttattgacaattttcagattatgtcacactgactcactt |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28639235 |
tgatatggacaaaataaactgacgttgtggtcgcggatttttttataaggcactcataactttattgacaattttcagattatgtcacactgactcactt |
28639136 |
T |
|
| Q |
113 |
atagttccttgtgctactgattttgcttttactgtaatnnnnnnnntaaaataa--ttatgcttgctgcaaaatagagtttggcagtgataccaaaacca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28639135 |
atagttccttgtgctactgattttgcttttactgtaataaaaaaaaaaaaaaaaaattatgcttgctgcaaaatagagtttggcagtgataccaaaacca |
28639036 |
T |
|
| Q |
211 |
cctagatgtatttctttgtcagttgttttattcaccttttcaaaagtagagattctttttggaccattccaaaaaataataatttatttgtttgctttgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28639035 |
cctagatgtatttctttgtcagttgttttattcaccttttcaaaagtagagattctttttggaccattccaaaaaataataatttatttgtttgctttat |
28638936 |
T |
|
| Q |
311 |
tccctttttctctatagttacttgttcttgaagttttaatttttcttcttcttcattttaggtacaccaaaatggatacatgtttgacaccacttcctga |
410 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28638935 |
ttcctttttctctatagttacttgttcttgaagttttaatttttcttcttcttcactttaggtacaccaaaatggatacatgtttgacaccacttcctga |
28638836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University