View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2993_high_11 (Length: 260)
Name: NF2993_high_11
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 30665992 - 30666212
Alignment:
| Q |
19 |
gaacagacaacacatctttcccttcctgataatgtcagcggcttcacggtatctctgtctgatcagttttgctggctctcctgcatttccactttcaagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30665992 |
gaacagacaacacatctttcccttcctgataatgtcagcggcttcacggtatctctgtctgatcagttttgctggctctcctgcatttccactttcaagc |
30666091 |
T |
|
| Q |
119 |
tctccagcactcatcatgatggggctgtaacacaatttcaacatcaaattagttagaagattatgtagcacaacatatgctatatactgagcatatttgg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666092 |
tctccagcactcatcatgatggggctgtaacacaatttcaacatcaaattatgtagaagattatgtagcacaacatatgctatatactgagcatatttgg |
30666191 |
T |
|
| Q |
219 |
aagagcttctgtggtcctgct |
239 |
Q |
| |
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|||||||||| ||||| |||| |
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| T |
30666192 |
aagagcttctttggtcttgct |
30666212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 34435358 - 34435480
Alignment:
| Q |
23 |
agacaacacatctttcccttcctgataatgtcagcggcttcacggtatctctgtctgatcagttttgctggctctcctgcatttccactttcaagctctc |
122 |
Q |
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||||||||||| || || || || || ||||| | ||||| | |||||| |||| || ||||||||||| ||||| |||||||||||||| ||||||| |
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| T |
34435358 |
agacaacacattttcccttttcttattatgtctgatgcttctctgtatctttgtcgaattagttttgctggttctcccgcatttccactttctagctctc |
34435457 |
T |
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| Q |
123 |
cagcactcatcatgatggggctg |
145 |
Q |
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|||||||||||||||| |||||| |
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| T |
34435458 |
cagcactcatcatgatagggctg |
34435480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 6853729 - 6853850
Alignment:
| Q |
23 |
agacaacacatctttcccttcctgataatgtcagcggcttcacggtatctctgtctgatcagttttgctggctctcctgcatttccactttcaagctctc |
122 |
Q |
| |
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||||| ||||||||||| || ||||||||||| | || |||||||| || || || |||| ||||| ||||||||||||||||||||||| | |||| |
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| T |
6853729 |
agacagcacatctttccttttctgataatgtcggacgcctcacggtacctttgcctaatcaactttgcaggctctcctgcatttccactttccaattctc |
6853828 |
T |
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| Q |
123 |
cagcactcatcatgatggggct |
144 |
Q |
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| ||||||||||| || ||||| |
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| T |
6853829 |
cggcactcatcattatagggct |
6853850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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