View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2993_high_9 (Length: 299)
Name: NF2993_high_9
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 6 - 280
Target Start/End: Complemental strand, 47304712 - 47304438
Alignment:
| Q |
6 |
agcagcacagacaatcatcctatcacaacaaagtccatccaaactaggtgcccctatgcccacaggattaaccataggattatcaattccaccaggtgct |
105 |
Q |
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|||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47304712 |
agcaacacaaacaatcatcctatcacaaccaagtccatccaaactaggtgcccctatgcccacaggattaaccataggattatcaattccaccaggtgct |
47304613 |
T |
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| Q |
106 |
gatggatacacaaaattccaaaggtaagagtagaaatctttaagtttaacattttccaatccaacagggtatgaactatagaataaagggtgttgtaaaa |
205 |
Q |
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| T |
47304612 |
gatggatacacaaaattccaaaggtaagagtagaaatctttaagtttaacattttccaatccaacagggtatgaactatagaataaagggtgttgtaaaa |
47304513 |
T |
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| Q |
206 |
tagctcctaataatttaacatcattgggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttac |
280 |
Q |
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| T |
47304512 |
tagctcctaataatttaacatcattgggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttac |
47304438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 22 - 280
Target Start/End: Complemental strand, 47301810 - 47301540
Alignment:
| Q |
22 |
atcctatcacaacaaagtccatccaaactaggtgcccctatgcccacaggattaaccataggattatcaattccaccaggtgctgatggatacacaaaat |
121 |
Q |
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| T |
47301810 |
atcctgtcacaaccaagtccatccaaactaggtgcccctatacccacaggattaatcataggattatcaatcccaccgggtgctgaaggatacacaaaat |
47301711 |
T |
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| Q |
122 |
tccaaaggtaagagtagaaatcttta------------agtttaacattttccaatccaacagggtatgaactatagaataaagggtgttgtaaaatagc |
209 |
Q |
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| T |
47301710 |
tccaaacagaatagtggaaatctttatcagaactcttaagtttaacactttctaatccaacagggtatgaactatagaaataaggctgttgtaaaatagc |
47301611 |
T |
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| Q |
210 |
tcctaataatttaacatcattgggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttac |
280 |
Q |
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| T |
47301610 |
tcctaatagtttaacaccattaggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttac |
47301540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 6 - 280
Target Start/End: Complemental strand, 17841963 - 17841677
Alignment:
| Q |
6 |
agcagcacagacaatcatcctatcacaacaaagtccatccaaactaggtgcccctatgcccacaggattaaccataggattatcaattccaccaggtgct |
105 |
Q |
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|||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||| |
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| T |
17841963 |
agcaacacaaacaatcatcctatcacaaccaagtccatccaaactaggtgcccctatacccacaggattaatcataggattatcaatcccacaaggtgct |
17841864 |
T |
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| Q |
106 |
gatggatacacaaaattccaaaggtaagagtagaaatcttta------------agtttaacattttccaatccaacagggtatgaactatagaataaag |
193 |
Q |
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|| ||||||||||||||||||| ||||||| ||||||||| | ||||||| |||||||||||||||||||||||||| |||| |||| |
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| T |
17841863 |
gaaggatacacaaaattccaaacagaagagtacaaatctttatcagaactcttaaatttaacactttccaatccaacagggtatgaactaaagaacaaag |
17841764 |
T |
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| Q |
194 |
ggtgttgtaaaatagctcctaataatttaacatcattgggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttac |
280 |
Q |
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| T |
17841763 |
gctgttgtaaaatagctcctactaatttaacatcattaggtaaagcttcagagccagcacgcatagcgatgttatgaactatgttac |
17841677 |
T |
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