View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2993_low_10 (Length: 398)
Name: NF2993_low_10
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_low_10 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 398
Target Start/End: Complemental strand, 11840585 - 11840202
Alignment:
| Q |
17 |
ataaggaagggcaaccaatgatcctttggcaatttatgtatcctatataaagatctcatcttatatatatgcaataagctatcacttttgtgtaagcaat |
116 |
Q |
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| T |
11840585 |
ataaggaagggcaaccaatgatcctttggcaatttatgtatcctatataaagatctcatctcatatttatgcaataagctatcacttttgtgtaagcaat |
11840486 |
T |
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| Q |
117 |
tttagcaattagtgcactttgttattttgtaggtatatgttatatgtatatatcannnnnnnnn-ctttgaaagaatat--------atcatatatatgt |
207 |
Q |
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| T |
11840485 |
tttagcaattagtgcactttgttattttgtaggtatatgt-------atatatcattttttttttctttgaaagaatatgtatatatatcatatatatgt |
11840393 |
T |
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| Q |
208 |
gccgttgattgctttatatatgttgaaattttcatcgatcaatgaaatatttctacttctaataaacatatttgtttgctagatcttttttgttgtggtt |
307 |
Q |
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| T |
11840392 |
gctgttgattgctttatatatgttgaaattttcatcgatcaatgaaatatttctacttctaataaacatatttgtttgctagatcttttttgttgtggtt |
11840293 |
T |
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| Q |
308 |
atttatgatgaaatattcttgaaaaattgatctctgatttgcagctcatataatattttctaaatttttatatagggatttgatcaattta |
398 |
Q |
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| T |
11840292 |
atttatgatgaaatattcttgaaaaattgatctctgatttgcagctcatataatattttctaaatttttatatagggatttgatcaattta |
11840202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 11826621 - 11826549
Alignment:
| Q |
198 |
atatatatgtgccgttgattgctttatatatgttgaaattttca----tcgatcaatgaaatatttctacttc |
266 |
Q |
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| T |
11826621 |
atatatatgtgtcgttgattgctttatatatgttgaaattttcatagctagatcaatgaaatatttctacttc |
11826549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 11826751 - 11826698
Alignment:
| Q |
21 |
ggaagggcaaccaatgatcctttggcaatttatgtatcctatataaagatctca |
74 |
Q |
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| T |
11826751 |
ggaagggcaactaattatcctttggcaatttatgtatcgcatataaagatctca |
11826698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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