View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2993_low_11 (Length: 381)
Name: NF2993_low_11
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 52761817 - 52762168
Alignment:
| Q |
19 |
aaattgaggagtctcaacctttttaaatgcatacatagatgttataggtacctgtgaagcgtaggtctgttggaatgggcttttatcttcattaagctga |
118 |
Q |
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| T |
52761817 |
aaattgaagagtctcaacctttttaaatgcatacatagatgttataggtacctgtgaagcgtaggtctgttggaatgggcttttatcttcattaagctga |
52761916 |
T |
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| Q |
119 |
agaattgatttaaacaagatttatcaatgtagtatataaataatgctaattcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcg |
218 |
Q |
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| T |
52761917 |
agaattgatttaaacaagatttatcaatgtagtatataaataatgctaattcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcg |
52762016 |
T |
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| Q |
219 |
tcatcaagaatgcaaagtgagaaaggacaaagattggtaattaaaggattcatacatctttgaattgaaaaaggccgagatcgccaaggtaagagatgga |
318 |
Q |
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| T |
52762017 |
tcataaagaatacaaagtgag-aaggacaaagattggtaattaaaggattcatacatctttgaattgaaaaaggccgagatcgccaaggtaagagatgga |
52762115 |
T |
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| Q |
319 |
tcgctgagctgattcaattggaatgatcaattgaacaagttgcacaggttctg |
371 |
Q |
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| T |
52762116 |
tcgctgagctgattcaattggaatgatcaattgaacaagttgcataggttctg |
52762168 |
T |
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