View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2993_low_12 (Length: 355)
Name: NF2993_low_12
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_low_12 |
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| [»] scaffold0001 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 32570042 - 32569712
Alignment:
| Q |
19 |
gttttctctgtatgatattttaactattttaatcatatttcatatggatatgttcattacaatgataaatttaattagtggggcatgtcattgacttaag |
118 |
Q |
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| T |
32570042 |
gttttctctgtatgatattttaactattttaatcatatttcatatggatatgttcattacaatgataaatttaattagtggggcatgtcattgacttaag |
32569943 |
T |
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| Q |
119 |
----------aaataaaaaatagtacttcaaattgcgtgatctgttttggcttttatgtgaatataaaaactaagacaatttctagatttatcagtaaca |
208 |
Q |
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| T |
32569942 |
gtctattaaaaaatgaaaaatagtacttcaaattgcgtgatctgttttggcttttatgtgaatataaaaactaagacaatttctagatttatcagtaaca |
32569843 |
T |
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| Q |
209 |
cagtttctggcatgcagagtagttaattggggtggcagtagcaatatttgtttatgaaattattgttgtgatgttgttttccttgtttccaaatcctgtg |
308 |
Q |
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| T |
32569842 |
cagtttctggcatgcagagtagttaattggggtggcagtagcaatatttgtttatgaaattattgttgtgatgttgttttccttgtttccaaatcctgtg |
32569743 |
T |
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| Q |
309 |
agatatgtttgttgttgaaggatggattcat |
339 |
Q |
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| T |
32569742 |
agatatgtttgttgttgaaggatggattcat |
32569712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 186 - 339
Target Start/End: Original strand, 4134 - 4288
Alignment:
| Q |
186 |
aatttctagatttatcagtaacacagtttctggcatgcagagtagttaattggggt-ggcagtagcaatatttgtttatgaaattattgttgtgatgttg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
4134 |
aatttctagatttatcagtaacacagtttctggcatgcagagtagttaattggggttggcagtagcaatatttgtttatgaaatcattgttgttatgttg |
4233 |
T |
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| Q |
285 |
ttttccttgtttccaaatcctgtgagatatgtttgttgttgaaggatggattcat |
339 |
Q |
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| T |
4234 |
ttttccctgtttccaaatcccgtgagatatgtttgttgttgaaggttggattcat |
4288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 4066 - 4132
Alignment:
| Q |
22 |
ttctctgtatgatattttaactattttaatcatatttcatatggatatgttcattacaatgataaat |
88 |
Q |
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| T |
4066 |
ttctatgtatgatattttaactattttaatcatatttcatacggatatgttcattacaatgataaat |
4132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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