View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2993_low_13 (Length: 352)
Name: NF2993_low_13
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 50676542 - 50676877
Alignment:
| Q |
1 |
gggtcagctacatgaatcaaactacgctgcaatgttatatcatatatcttgattatgtggtagagattcgacaatacaacattcatagagtnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50676542 |
gggtcagctacatgaatcaaactacgctacagtgttatatcatatatcttgattatgtcgtagagattcgacaatacaacattcatagagtaaaaaaaaa |
50676641 |
T |
|
| Q |
101 |
nnnncaa--gttgaggggaagagtaattacttaccataagcacaatgaacaaaaatgggacgattaagatctcttttacgaagcgcccatttaacagcca |
198 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50676642 |
aaaaaaaaagttgaggggaagagtaattacttaccataagcacaatgaacaaaaatgggacgattaagatctcttttacgaagcgcccatttaacagcca |
50676741 |
T |
|
| Q |
199 |
attcaatatcaccaggttgaggagacctagtatcccaagtaggaacacatctataaggcaaaccaccactcaaatttttcaacctcggaaactcacaagt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50676742 |
attcaatatcaccaggttgaggagacctagtatcccaagtaggaacacatctataaggcaaaccaccactcaaatttttcaacctcggaaactcacaagt |
50676841 |
T |
|
| Q |
299 |
acaatcaataatagcaggatcaccaggcggcatctt |
334 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
50676842 |
acaatcaataatagcaggatcaccaggcggcatctt |
50676877 |
T |
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