View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2993_low_14 (Length: 318)
Name: NF2993_low_14
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 24 - 313
Target Start/End: Original strand, 52675323 - 52675612
Alignment:
| Q |
24 |
ggaattgaagaattaatgttgggaagaaagtgcatggttagctagcaaggtgctaattgagttggtgtgatgatttggtacgcagaagaaagatagaagt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52675323 |
ggaattgaagaattaatgttgggaagaaagtgcatagttagctagcaaggtgctaattgagttggtgtgatggtttggtacgcagaagaaagatagaagt |
52675422 |
T |
|
| Q |
124 |
tagatcgtcaggtacttgaaagaattttctttcttgagattgagtagatgttcttctagttgttactgctagccgttgacgnnnnnnnggaggtggtgga |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52675423 |
tagatcgtcaggtacttgaaagaattttctttcttgagattgagtagatgttcttctagttgttactgctagccgttgacgtttttttggaggtggtgga |
52675522 |
T |
|
| Q |
224 |
caaaccaagtcaaaggagttctttgatggtgatgtgggtggtgtgtggtaataataatgctcttcctcttgtacctcctttcttctctct |
313 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52675523 |
cagaccaagtcaaaggagttctttgatggtgatgtgggtggtgtgtggtaataataatgctcttcctcttgtacctcctttcttctctct |
52675612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University