View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2993_low_16 (Length: 297)
Name: NF2993_low_16
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 118 - 293
Target Start/End: Complemental strand, 7554641 - 7554466
Alignment:
| Q |
118 |
cctaagcaatggaaatgcatctaattctaaaggatgacttcaagttacttataaactttccccgacgccgtaatggccggataagttcccagcaactctt |
217 |
Q |
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| T |
7554641 |
cctaagcaatggaaatgcatctaattctaaaggatgacttcaagttacttataaactttccccgacgccgtaatggccggataagttcccagcaactctt |
7554542 |
T |
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| Q |
218 |
ttcaccaccgtcctctgcggtaaacttcggcaccgtcatcgccaacttccgatcttgcctcgtcttcatctcactc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7554541 |
ttcaccaccgtcctctgcggtaaacttcggcaccgtcatcgccaacttccgatcttgcctcgtcttcatatcactc |
7554466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 118 - 293
Target Start/End: Complemental strand, 7544863 - 7544688
Alignment:
| Q |
118 |
cctaagcaatggaaatgcatctaattctaaaggatgacttcaagttacttataaactttccccgacgccgtaatggccggataagttcccagcaactctt |
217 |
Q |
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|||||||||| || |||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
7544863 |
cctaagcaatagatatgcatctaattttaaaggatgacttcaagctactcataaactttccccgacgccgtaatggccggacaagttcccagaaactctt |
7544764 |
T |
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| Q |
218 |
ttcaccaccgtcctctgcggtaaacttcggcaccgtcatcgccaacttccgatcttgcctcgtcttcatctcactc |
293 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7544763 |
ttcaccaccgtcctccgcggtaaacttcggcaccgtcatcgccaacttccgatcttgcctcgtcttcatatcactc |
7544688 |
T |
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