View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2993_low_22 (Length: 232)

Name: NF2993_low_22
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2993_low_22
NF2993_low_22
[»] chr7 (4 HSPs)
chr7 (6-98)||(4161368-4161464)
chr7 (151-211)||(4161309-4161369)
chr7 (117-150)||(20335790-20335823)
chr7 (113-157)||(4572252-4572296)
[»] chr8 (5 HSPs)
chr8 (122-210)||(11492037-11492127)
chr8 (117-157)||(27979234-27979274)
chr8 (117-157)||(28036503-28036543)
chr8 (122-154)||(11942533-11942565)
chr8 (125-157)||(32167463-32167495)
[»] chr3 (2 HSPs)
chr3 (117-152)||(49452954-49452989)
chr3 (179-211)||(29563921-29563953)
[»] chr2 (1 HSPs)
chr2 (122-157)||(23230569-23230604)
[»] scaffold0101 (1 HSPs)
scaffold0101 (123-153)||(43297-43327)
[»] chr4 (1 HSPs)
chr4 (122-152)||(9669420-9669450)
[»] chr1 (1 HSPs)
chr1 (113-150)||(9879522-9879559)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 4161464 - 4161368
Alignment:
Q  6 gtccaagaaaatcactcaagtcaaggtcagtgtctttcttccccaaattatcataagacaggtgac----ttaagttcacaacatctatcaagtgct 98  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||||||||||| ||||||||||    
T  4161464 gtccaagaaaatcacacaagtcaaggtcagtgtctttcttccccaaattatcataagacatgtgactttattaagttcacaacatcaatcaagtgct 4161368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 4161369 - 4161309
Alignment:
Q  151 ctggagaattgaacctttgaccttcaaaagaagcacacttcaagatctcaagccaatacca 211  Q
    ||||||||| ||||||  || ||||||||| |||||||||||||||| |||||||||||||    
T  4161369 ctggagaatcgaacctaagatcttcaaaaggagcacacttcaagatcccaagccaatacca 4161309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 20335790 - 20335823
Alignment:
Q  117 ttgacgaagttaaattagcccatccaaattgaca 150  Q
    |||| |||||||||||||||||||||||||||||    
T  20335790 ttgaagaagttaaattagcccatccaaattgaca 20335823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 4572252 - 4572296
Alignment:
Q  113 tttgttgacgaagttaaattagcccatccaaattgacactggaga 157  Q
    |||||||| |||| |||||||||||| |||||||||||| |||||    
T  4572252 tttgttgaagaagataaattagcccacccaaattgacaccggaga 4572296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 11492037 - 11492127
Alignment:
Q  122 gaagttaaattagcccatccaaattgacactg--gagaattgaacctttgaccttcaaaagaagcacacttcaagatctcaagccaatacc 210  Q
    |||| |||||||||||| ||||||||||||||  |||||| ||||||  |||||  | ||| |||||||| | ||||||||||||||||||    
T  11492037 gaagctaaattagcccacccaaattgacactgaagagaatcgaacctaagacctcgagaaggagcacactcccagatctcaagccaatacc 11492127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 27979274 - 27979234
Alignment:
Q  117 ttgacgaagttaaattagcccatccaaattgacactggaga 157  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  27979274 ttgaagaagttaaattagcccatccaaattgacactagaga 27979234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 28036543 - 28036503
Alignment:
Q  117 ttgacgaagttaaattagcccatccaaattgacactggaga 157  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  28036543 ttgaagaagttaaattagcccatccaaattgacactagaga 28036503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 11942565 - 11942533
Alignment:
Q  122 gaagttaaattagcccatccaaattgacactgg 154  Q
    |||||||||||| ||||||||||||||||||||    
T  11942565 gaagttaaattaacccatccaaattgacactgg 11942533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 32167495 - 32167463
Alignment:
Q  125 gttaaattagcccatccaaattgacactggaga 157  Q
    ||||||||||||||||||||||||||| |||||    
T  32167495 gttaaattagcccatccaaattgacaccggaga 32167463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 49452989 - 49452954
Alignment:
Q  117 ttgacgaagttaaattagcccatccaaattgacact 152  Q
    |||| |||||||||||||||||||||||||||||||    
T  49452989 ttgaagaagttaaattagcccatccaaattgacact 49452954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 29563953 - 29563921
Alignment:
Q  179 agaagcacacttcaagatctcaagccaatacca 211  Q
    ||||||||||||| |||||||||||||||||||    
T  29563953 agaagcacacttccagatctcaagccaatacca 29563921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 23230569 - 23230604
Alignment:
Q  122 gaagttaaattagcccatccaaattgacactggaga 157  Q
    |||||||||||||| |||||||||||||||||||||    
T  23230569 gaagttaaattagctcatccaaattgacactggaga 23230604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 43297 - 43327
Alignment:
Q  123 aagttaaattagcccatccaaattgacactg 153  Q
    |||||||||||||||||||||||||||||||    
T  43297 aagttaaattagcccatccaaattgacactg 43327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 9669450 - 9669420
Alignment:
Q  122 gaagttaaattagcccatccaaattgacact 152  Q
    |||||||||||||||||||||||||||||||    
T  9669450 gaagttaaattagcccatccaaattgacact 9669420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 9879559 - 9879522
Alignment:
Q  113 tttgttgacgaagttaaattagcccatccaaattgaca 150  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  9879559 tttgttgaagaagttaaattagcccacccaaattgaca 9879522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University