View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2993_low_26 (Length: 206)
Name: NF2993_low_26
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 41703700 - 41703866
Alignment:
| Q |
18 |
accacttgcatgattgcaccattgcttgcatattgagtcacatgaattactaagttgacatcatcttgatcacgagaaaagtctattgctttctgtgaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41703700 |
accacttgcatgattgcaccattgcttgcatattgactcacatgaattactaagttgacatcatcttcatcacgagaaaagtctattgctttctgtgaag |
41703799 |
T |
|
| Q |
118 |
tcaagagctctagtaacacaactccatagctataaacatcacttttatcggttaattggtagttgcg |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41703800 |
tcaagagctctagtaacacaactccatagctataaacatcacttttatcggttaattggtagttgcg |
41703866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 41814682 - 41814571
Alignment:
| Q |
73 |
tgacatcatcttgatcacgagaaaagtctattgctttctgtgaagtcaagagctctagtaacacaactccatagctataaacatcacttttatcggttaa |
172 |
Q |
| |
|
|||||||||| |||||| ||||| | |||| |||||||||| ||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41814682 |
tgacatcatcatgatcatgagaagaatctactgctttctgtcaagtcaaaaactctagcagcacaactccatagctataaacatcacttttatcggttaa |
41814583 |
T |
|
| Q |
173 |
ttggtagttgcg |
184 |
Q |
| |
|
||| ||||||| |
|
|
| T |
41814582 |
ctggcagttgcg |
41814571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 44888551 - 44888589
Alignment:
| Q |
126 |
tctagtaacacaactccatagctataaacatcactttta |
164 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
44888551 |
tctagcaagacaactccatagctataaacatcactttta |
44888589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 9118837 - 9118800
Alignment:
| Q |
138 |
actccatagctataaacatcacttttatcggttaattg |
175 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
9118837 |
actccaaagctataaacatcacttttctcggttaattg |
9118800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 9170441 - 9170477
Alignment:
| Q |
138 |
actccatagctataaacatcacttttatcggttaatt |
174 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
9170441 |
actccaaagctataaacatcacttttttcggttaatt |
9170477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University