View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2993_low_5 (Length: 634)
Name: NF2993_low_5
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 20 - 623
Target Start/End: Complemental strand, 38167647 - 38167055
Alignment:
| Q |
20 |
agatagatacgaaaaacatgtcaaaacatacaaggatttaatttaatcatgttgttaagggatgtggactctcctcttcaaaacattacatagacaaagg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38167647 |
agatagatacgaaaaacatgtcaaaacatacaaggatttaatttaatcatgttgttaagggatgtggactctcctcttcaaaacattacatagacaaagg |
38167548 |
T |
|
| Q |
120 |
tcaggaacctatggatatttccagcttttccaaggtgaaaacgaagatcacaaagctaccatgtagaaatttgtttacgcctcatcaacatcaagctcca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38167547 |
tcaggaacctatggatatttccagctttttcaaggtgaaaacgaagatcacaaagctaccatgtagaaatttgttcacgcctcatcaacatcaagctcca |
38167448 |
T |
|
| Q |
220 |
tattgatttagtttgccagcacattcaccgtgaacctttcgatcccttatgttctgataattgacaaatacggcaaacaggacataccatttataagaaa |
319 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38167447 |
t-ttgatttagtttgccagcacattcaccgtgaacctttcgatcccttatgttctgataattgacaaatacggcaaacaggacataccatttataggaaa |
38167349 |
T |
|
| Q |
320 |
gtccaatgcaagatagtttgttcagccctattatcaataaactcataggaaccaagctaaaaacatatgcaaaattttggtagcaataaaccccatcaga |
419 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38167348 |
gtccgatgcaagatagtttgttcagccctattatcaataaactcataggaaccaagctaaaaacatatgcaaaattttggtagcaataaaccccatcaga |
38167249 |
T |
|
| Q |
420 |
aaagagttaattttatcaattattatttgcgcacaatgcactcaatatcatacacagctcctatgatacaccaaaacaagcagctcaaacaagaaagaca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38167248 |
aaagagttaattttatcaattattatttgctcacaatgcactcaatatcatacatagctcctatgatacaccaaaacaagcagctcaaacaagaaagaca |
38167149 |
T |
|
| Q |
520 |
cctatctaaagatcaaacaaaatcaaactgccctcatgcaaaataactcctccaattcaaagttcttttgccaacaaggtgcacatcttctcaagtttgt |
619 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38167148 |
cctatctaaagatc----------aaactgccctcatgcaaaacaactcctctaattcaaagttcttttgccaacaagttgcacatcttctcaagtttgt |
38167059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 20 - 623
Target Start/End: Original strand, 38199457 - 38200049
Alignment:
| Q |
20 |
agatagatacgaaaaacatgtcaaaacatacaaggatttaatttaatcatgttgttaagggatgtggactctcctcttcaaaacattacatagacaaagg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38199457 |
agatagatacgaaaaacatgtcaaaacatacaaggatttaatttaatcatgttgttaagggatgtggactctcctcttcaaaacattacatagacaaagg |
38199556 |
T |
|
| Q |
120 |
tcaggaacctatggatatttccagcttttccaaggtgaaaacgaagatcacaaagctaccatgtagaaatttgtttacgcctcatcaacatcaagctcca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38199557 |
tcaggaacctatggatatttccagctttttcaaggtgaaaacgaagatcacaaagctaccatgtagaaatttgttcacgcctcatcaacatcaagctcca |
38199656 |
T |
|
| Q |
220 |
tattgatttagtttgccagcacattcaccgtgaacctttcgatcccttatgttctgataattgacaaatacggcaaacaggacataccatttataagaaa |
319 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38199657 |
t-ttgatttagtttgccagcacattcaccgtgaacctttcgatcccttatgttctgataattgacaaatacggcaaacaggacataccatttataggaaa |
38199755 |
T |
|
| Q |
320 |
gtccaatgcaagatagtttgttcagccctattatcaataaactcataggaaccaagctaaaaacatatgcaaaattttggtagcaataaaccccatcaga |
419 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38199756 |
gtccgatgcaagatagtttgttcagccctattatcaataaactcataggaaccaagctaaaaacatatgcaaaattttggtagcaataaaccccatcaga |
38199855 |
T |
|
| Q |
420 |
aaagagttaattttatcaattattatttgcgcacaatgcactcaatatcatacacagctcctatgatacaccaaaacaagcagctcaaacaagaaagaca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38199856 |
aaagagttaattttatcaattattatttgctcacaatgcactcaatatcatacatagctcctatgatacaccaaaacaagcagctcaaacaagaaagaca |
38199955 |
T |
|
| Q |
520 |
cctatctaaagatcaaacaaaatcaaactgccctcatgcaaaataactcctccaattcaaagttcttttgccaacaaggtgcacatcttctcaagtttgt |
619 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38199956 |
cctatctaaag----------atcaaactgccctcatgcaaaacaactcctctaattcaaagttcttttgccaacaagttgcacatcttctcaagtttgt |
38200045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 485 - 623
Target Start/End: Original strand, 38172697 - 38172825
Alignment:
| Q |
485 |
atacaccaaaacaagcagctcaaacaagaaagacacctatctaaagatcaaacaaaatcaaactgccctcatgcaaaataactcctccaattcaaagttc |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
38172697 |
atacaccaaaacaagcagctcaaacaagaaagacacctatctaaagatca----------aactgccctcatgcaaaacaactcctctaattcaaagttc |
38172786 |
T |
|
| Q |
585 |
ttttgccaacaaggtgcacatcttctcaagtttgttcat |
623 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38172787 |
ttttgccaacaagttgcacatcttctcaagtttgttcat |
38172825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 11590418 - 11590359
Alignment:
| Q |
485 |
atacaccaaaacaagcagctcaaacaagaaagacacctatctaaagatcaaacaaaatca |
544 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11590418 |
atacaccaaaacaagcagttcaacaaagaaagacacctatctaaagatcaaacaaaatca |
11590359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 623
Target Start/End: Complemental strand, 11590316 - 11590234
Alignment:
| Q |
540 |
aatcaaactgccctcatgcaaaataactcctccaattcaaagttcttttgccaacaaggtgcacatcttctcaagtttgttcat |
623 |
Q |
| |
|
|||||||||| ||||||||||| | |||| | ||||||||| |||||||||||| || |||||||||| |||||||| ||||| |
|
|
| T |
11590316 |
aatcaaactggcctcatgcaaac-agctcccctaattcaaagctcttttgccaaccagttgcacatcttttcaagtttcttcat |
11590234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 278 - 471
Target Start/End: Complemental strand, 27012459 - 27012268
Alignment:
| Q |
278 |
aattgacaaatacggcaaacaggacataccatttataagaaagtccaatgcaagatagtttgttcagccctattatcaataaactcataggaaccaagct |
377 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| |||| |||| || ||||||||||||||||||||||| || ||||||||||||||| |||| ||||| |
|
|
| T |
27012459 |
aattgacaaatacggaaaacaggactgaccatgtataggaaaatcacatgcaagatagtttgttcagcccaatcatcaataaactcatatgaacaaagct |
27012360 |
T |
|
| Q |
378 |
aaaaacatatgcaaaattttggtagcaataaaccccatcagaaaagagttaattttatcaattattatttgcgcacaatgcactcaatatcata |
471 |
Q |
| |
|
||| ||| | || |||||||||||||| |||| |||||||||| ||||||||||||||| |||||||||||| |||||| |||||| ||||| |
|
|
| T |
27012359 |
aaagacacaagctaaattttggtagcagtaaa-cccatcagaagagagttaattttatc-attattatttgcatgcaatgctctcaatgtcata |
27012268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University