View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2993_low_6 (Length: 619)
Name: NF2993_low_6
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 234 - 612
Target Start/End: Complemental strand, 55457031 - 55456651
Alignment:
| Q |
234 |
aaagaataagtttatttttatgtcttcagattcataagttattttcaannnnnnnagcactgccgtactcactttttgttattttgcttattggtttgat |
333 |
Q |
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| T |
55457031 |
aaagaataattttatttttatgtcttcagattcataagttattttcaatttttttaacactgtcgtactcactttttattattttgcttattggtttgat |
55456932 |
T |
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| Q |
334 |
tctcgaaatttcttcaacttgaaataaaaaattaaattggtaatgacaatttagagaaggaaaaacatgaaatctctctctaaatcaatc--nnnnnnnn |
431 |
Q |
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| T |
55456931 |
tctcgaaatttcttcaacttgaaataaaaaattaaattggtaatgacaatttagagagggaaaaacatgaaatctctctctaaatcaatcaacaaaaaaa |
55456832 |
T |
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| Q |
432 |
ttagggtggtttcattttttcataactaactgtctccattaactannnnnnncctaaccttattctatatgatgacttaacttattttaagcacg-aaaa |
530 |
Q |
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| T |
55456831 |
ttaggatggtttcattttttcataactaattgtctccattaact-tttttttcctaaccttattctatatgatgacttaacttattttaagcacgaaaaa |
55456733 |
T |
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| Q |
531 |
acataaatatttacggttaattcatatttgttnnnnnnnnnnnntcagatattctcatgatattatgaacatgatgattcat |
612 |
Q |
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| T |
55456732 |
acataaatatttacagttaattcatatttgttaaaaaaaaaaattcagatattctcatgatattatgaacatgatgattcat |
55456651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 103 - 252
Target Start/End: Complemental strand, 55457196 - 55457047
Alignment:
| Q |
103 |
ctattgcattgtgcggctgccgtatggaatacaagtcctaacaatacctctcctatgactaaaaaatgaatatgaccctattttctttttaaggaaaata |
202 |
Q |
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| T |
55457196 |
ctattgcattgtgcggctgccgtatggaatacaagtcctaacaatacctctcctatgactaaaaaatgaatatgaccctattttctttttaaggaaaata |
55457097 |
T |
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| Q |
203 |
aaatgaaactgatctcacttaattaaattataaagaataagtttattttt |
252 |
Q |
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| T |
55457096 |
aaatgaaactgatctcacttaattaaattataaagaataattttattttt |
55457047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 55457273 - 55457222
Alignment:
| Q |
18 |
tctctcggaataaatcagtcaatttagagatgacaaaattagagtggtttgg |
69 |
Q |
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| T |
55457273 |
tctctcggaataaatcagccaatttagagatgagaaaattagagtggtttgg |
55457222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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