View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2993_low_9 (Length: 408)
Name: NF2993_low_9
Description: NF2993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2993_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 133 - 386
Target Start/End: Complemental strand, 17692191 - 17691937
Alignment:
| Q |
133 |
ttccttcaacactacctcaacagatccaacatcaccacctcaacagaacttaatcatcttttcaaacaaacatgtctggttacataagggtgtggtacat |
232 |
Q |
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| T |
17692191 |
ttccttcaacactacctcaacagatacaacatcaccacctcaacagaacttaatcatcttttcaaacaaacatgtatggttacataagggtgtggtacat |
17692092 |
T |
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| Q |
233 |
ttgttcctctttgttttaaaccaccaatttgatcattctgatctttctcagtttcatatttccatacattcaattacgaaactgtcg-aaaaattgatgg |
331 |
Q |
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| T |
17692091 |
ttgttcctctttgttgtaaaccaccaatttgaccattctgatctttcccagtttcatatttccatacattcaattacgaaactttcgaaaaaattgatgg |
17691992 |
T |
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| Q |
332 |
gtttcaatgttgaaaccggtttttagtgcttttgatatggttgaaacaacgccgt |
386 |
Q |
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| T |
17691991 |
gtttcaatgttgaaaccggtttttagtgcttttgatatggttgaaacaacgccgt |
17691937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 32132966 - 32132902
Alignment:
| Q |
133 |
ttccttcaacactacctcaacagatccaacatcaccacctcaacagaacttaatcatcttttcaa |
197 |
Q |
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| T |
32132966 |
ttccttcaacatcacctcaacagatccaacaacaccacctcgacataacttaatcatcttgtcaa |
32132902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 377
Target Start/End: Complemental strand, 1258248 - 1258175
Alignment:
| Q |
305 |
attacgaaactgtcgaaaaa-ttgatgggtttcaatgttgaaaccggtttttagtgcttttgatatggttgaaa |
377 |
Q |
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| T |
1258248 |
attacgaaactgtctaaaaaattgatgagtttcaatgttgaaaccggttttgagtgcttttgatattgttgaaa |
1258175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 30642180 - 30642116
Alignment:
| Q |
133 |
ttccttcaacactacctcaacagatccaacatcaccacctcaacagaacttaatcatcttttcaa |
197 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||| |
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| T |
30642180 |
ttccttcaacaccacctcaacagatccaacaacaccacctcaacataacttaatcatcttgtcaa |
30642116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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