View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2994R-Insertion-1 (Length: 956)
Name: NF2994R-Insertion-1
Description: NF2994R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994R-Insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 633; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 38 - 934
Target Start/End: Complemental strand, 31919571 - 31918656
Alignment:
| Q |
38 |
attagtaatgtatgatggactttcttgttttttattaatgtatttgttctttagcacctcttgtgaaatttatggttgatttttctgtaccttattaatc |
137 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
31919571 |
attagtaatgtatgttggactttcttgttttttattaatgtatttgttctttagcacctcttgtgatatctatggttgatttttctgtaccttattaatc |
31919472 |
T |
|
| Q |
138 |
caaattttcttttgcaaaaagaaaattgagaccatgatttatgtgtgcaaaaaggattatggaataactattttatttcagatttagata----caattg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||| |
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|
| T |
31919471 |
caaattttcttttgcaaaaagaaaattgagaccatgatttatgtgtgtaaaaaggattatgcaataactattttatttctgatttagatagatacaattg |
31919372 |
T |
|
| Q |
234 |
agtagcatcaaaataatgcaataatggaatatacaaaacaaatcctaacattaaaacaattagctagaaacataaagagttaaagacaatcattcaggaa |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| | |
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|
| T |
31919371 |
agtagcatcaaaataatgcaataatggaatatacaaaacaaatcctaacatcaaaacaattagctagaaacataaagagttaaagacaatctttcaggca |
31919272 |
T |
|
| Q |
334 |
agctgcaagactcaaaaccccgtacaatattgatggcaccacatggagctccaataggcgaaagcgctgcaatcaacctttgtttccacttaatctaaag |
433 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31919271 |
agctacaagactcaaaaccccgtacaatattgatggcaccacatggagctccaatatgcgaaagcgctgcaatcaacctttgtttccacttaatctaaag |
31919172 |
T |
|
| Q |
434 |
cgatgtaattatcattgtttgaggctatcatgtgcaagatgcacaaggctgcacaaaacagaaaatcttacaaagatgccgcatatagat---------- |
523 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31919171 |
cgatgtaattatcattgtttgaggctaacatgtgcaagatgcacaaggctgcacaaaacagaaaatcttacaaagatgccgcatatagatggaacattac |
31919072 |
T |
|
| Q |
524 |
---ggaaacaattataaaagaaaatgacaacaaacaccccccagcttatagaccatacaccccttaagaaaaaggtaggctcaacagaccnnnnnnnngc |
620 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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|
| T |
31919071 |
ccgggaaacaattataaacgaaaataacaacaaacaccccccagcttatagaccatacaccccttaagaaaaaggtaggcccaacagaccaaaaaacagc |
31918972 |
T |
|
| Q |
621 |
caaattgccccaacaacagaagcccgcagataacaggcttgggctcaaaatagattccagcagacctcaatagcataaaacta--acnnnnnnnnnnnnn |
718 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
31918971 |
caaatggccccaacaacagaagcccgcagataacaggcttgggctcaaaatagattccagcagacctcaatagcataaaactaataaaaaaataaaaaat |
31918872 |
T |
|
| Q |
719 |
nnnnnnccttttctgcctgatacaccagctatgtccaatacaccccttacctcaacaaacaatcttttggattccaagtccattcataatac-aacatgt |
817 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
31918871 |
aaaaaaccttttctgcctaatacaccagctctgtccaatacaccccttacctcaacaaacaatcttttggattccaagtccattcataatacaaacatat |
31918772 |
T |
|
| Q |
818 |
tggaatttctagcctactcaaactccaccgccacaataacacctttaatattctccattattgcctc-agatcaatcactcaatattgaaaaataaaatt |
916 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||| |
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|
| T |
31918771 |
tggaatttctagcctactcaaactccaccgccacaataacacc-ttaatattctccattattgcctcaagatcaatcacctcattttgaaaaataacatt |
31918673 |
T |
|
| Q |
917 |
attcctagaattgtcaaa |
934 |
Q |
| |
|
|||||||| ||||||||| |
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|
| T |
31918672 |
attcctag-attgtcaaa |
31918656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 76 - 311
Target Start/End: Complemental strand, 43036495 - 43036263
Alignment:
| Q |
76 |
tgtatttgttctttagcacctcttgtgaaatttatggttgatttttctgtaccttattaatccaaattttcttttgcaaaaagaaaattgagaccatgat |
175 |
Q |
| |
|
||||||||||||||| ||| |||||||| || || ||||| |||| ||||||| |||||| |||||| | ||||||||||||||||||||||||||||| |
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|
| T |
43036495 |
tgtatttgttctttaacacttcttgtgatatctactgttgacttttgtgtacctcattaattcaaattctattttgcaaaaagaaaattgagaccatgat |
43036396 |
T |
|
| Q |
176 |
ttatgtgtgcaaaaaggattatggaataactattttatttcagatttagatacaattgagtagcatcaaaataatgcaataatggaatatacaaaacaaa |
275 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| | |||||| ||| |||| |||||||||| ||||||| | ||| | ||| || ||||| ||| || |
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|
| T |
43036395 |
ttatgtgtgtaaaaaggattatgcaacaactact---tttcagctttggataaaattgagtagtatcaaaagagtgcgagaataaaaaatacagaactaa |
43036299 |
T |
|
| Q |
276 |
tcctaacattaaaacaattagctagaaacataaaga |
311 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
43036298 |
ggctaacatcaaaacagttagcaagaaacataaaga |
43036263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 43036188 - 43036115
Alignment:
| Q |
356 |
tacaatattgatggcaccacatggagctccaataggcgaaagcgctgcaatcaacctttgtttccacttaatct |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||| |||||||||||||| |
|
|
| T |
43036188 |
tacaatattgatggcaccacatggagctccattagggcaaagtactgcaataaacctcactttccacttaatct |
43036115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 76 - 311
Target Start/End: Original strand, 740364 - 740596
Alignment:
| Q |
76 |
tgtatttgttctttagcacctcttgtgaaatttatggttgatttttctgtaccttattaatccaaattttcttttgcaaaaagaaaattgagaccatgat |
175 |
Q |
| |
|
||||||||||||||| ||| |||||||| || || ||||| |||| ||||||| |||||| |||||| | ||||||||||||||||||||||||||||| |
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|
| T |
740364 |
tgtatttgttctttaacacttcttgtgatatctactgttgacttttgtgtacctcattaattcaaattctattttgcaaaaagaaaattgagaccatgat |
740463 |
T |
|
| Q |
176 |
ttatgtgtgcaaaaaggattatggaataactattttatttcagatttagatacaattgagtagcatcaaaataatgcaataatggaatatacaaaacaaa |
275 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| | |||||| ||| |||| |||||||||| ||||||| | ||| | ||| || ||||| ||| || |
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|
| T |
740464 |
ttatgtgtgtaaaaaggattatgcaacaactact---tttcagctttggataaaattgagtagtatcaaaagagtgcgagaataaaaaatacagaactaa |
740560 |
T |
|
| Q |
276 |
tcctaacattaaaacaattagctagaaacataaaga |
311 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
740561 |
ggctaacatcaaaacagttagcaagaaacataaaga |
740596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 356 - 429
Target Start/End: Original strand, 740671 - 740744
Alignment:
| Q |
356 |
tacaatattgatggcaccacatggagctccaataggcgaaagcgctgcaatcaacctttgtttccacttaatct |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||| |||||||||||||| |
|
|
| T |
740671 |
tacaatattgatggcaccacatggagctccattagggcaaagtactgcaataaacctcactttccacttaatct |
740744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 725 - 885
Target Start/End: Original strand, 50069382 - 50069543
Alignment:
| Q |
725 |
ccttttctgcctgatacaccagctatgtccaatacaccccttacctcaacaaacaatcttttggattccaagtccattcataatacaa-catgttggaat |
823 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||||||| | |||||||||||||| || |||||| || |||||||||||||||| ||||||| ||| |
|
|
| T |
50069382 |
ccttttctgcacaatacaccaacattgtccaatacacccctaatctcaacaaacaatcattcggattctaaatccattcataatacaaacatgttgaaat |
50069481 |
T |
|
| Q |
824 |
ttctagcctactcaaactccaccgccacaataacacctttaatattctccattattgcctca |
885 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||| | | ||||||| |||| ||||||||||| |
|
|
| T |
50069482 |
ttttagtctactcaaactccaccgccacaataaaaaccttaatatcctccgttattgcctca |
50069543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 468 - 527
Target Start/End: Original strand, 50065282 - 50065341
Alignment:
| Q |
468 |
caagatgcacaaggctgcacaaaacagaaaatcttacaaagatgccgcatatagatggaa |
527 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |
|
|
| T |
50065282 |
caagatgcacaaggctgcacaaaacggaaaatcttacaaagatgccgcatagagacggaa |
50065341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 781 - 844
Target Start/End: Complemental strand, 26209527 - 26209464
Alignment:
| Q |
781 |
tcttttggattccaagtccattcataatacaacatgttggaatttctagcctactcaaactcca |
844 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| |||| ||| | |||||||||||| ||||| |
|
|
| T |
26209527 |
tcttgtggattccaactccattcataatacaacacgttgaaatatttagcctactcaagctcca |
26209464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 777 - 862
Target Start/End: Complemental strand, 25846499 - 25846413
Alignment:
| Q |
777 |
acaatcttttggattccaagtccattcataataca-acatgttggaatttctagcctactcaaactccaccgccacaataacacctt |
862 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||| |||||||||||||| | ||| |||||||||| |||| ||||||||||| |
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|
| T |
25846499 |
acaaccttttggattccaacaccgttcataatacagacatgttggaattttaactctattcaaactccaatgccaaaataacacctt |
25846413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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