View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994R-Insertion-11 (Length: 550)
Name: NF2994R-Insertion-11
Description: NF2994R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994R-Insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 40801003 - 40800725
Alignment:
| Q |
10 |
tttcaccctttgcgacaattatggaataaggactcaaatcacatgcaaacaacaacataaaagaattagaaagagaccgagagataatatggagaaaaat |
109 |
Q |
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| T |
40801003 |
tttcaccctttgcgacaattatggaataaggactcaaatcacatgcaaacaacaacataaaaggattagaaagagaccgagagataatatggagaaaaat |
40800904 |
T |
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| Q |
110 |
ttggcaaccatcctatatatgaggagcttatctatcaatgcggaacatttcccattatatctgaatttgtattaaccaagaagattaaataggaaataga |
209 |
Q |
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| T |
40800903 |
ttggcagtcatcctatatatgaggagcttctctatcaatgcggaacatttcccattatatctgaatttgtattaaccaagaagagtaaaaaggaaataga |
40800804 |
T |
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| Q |
210 |
atacagaaacagttcttcaatcatcaagaaatattattgcatgtaatttgttccgttagaagaagtggcttcctctgtggaa |
291 |
Q |
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| T |
40800803 |
atacaaaaacagttcttcaatcatcaagaaa---tattgcatgtaattcgtaccgttagaagaagtggcttcctctatggaa |
40800725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 431 - 550
Target Start/End: Complemental strand, 40799351 - 40799232
Alignment:
| Q |
431 |
aaagataaaaatacgaaacaatagcctatataattgcatttaccttaaacactttaattaatggtggaggaaaatagactacatcaagttgttccatctt |
530 |
Q |
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| T |
40799351 |
aaagataaaaataagaaacaatagcctatataattgcatttaccttaaacactttaattaatggtcgaggaaaataggctacatcaagttgttccatctt |
40799252 |
T |
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| Q |
531 |
cttcctcccttttccccttc |
550 |
Q |
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| T |
40799251 |
cttcctcccttttccccttc |
40799232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 288 - 409
Target Start/End: Complemental strand, 40799719 - 40799597
Alignment:
| Q |
288 |
ggaataacaattaacacaacaaagaaggaatatgatttttaaaa-caaaaatagggaatatgtatatgcaattgtttaatgtaaatgtagtaaaggtaaa |
386 |
Q |
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| T |
40799719 |
ggaacaacaattaacacaacaaagaaggaatatgatttttaaaagcaaaaataaggaatgcgtgtatgcaattgtttaaagtaaatgtagtaaaggtaaa |
40799620 |
T |
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| Q |
387 |
ttgaaggaaatttaaaaggaaat |
409 |
Q |
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| T |
40799619 |
ttgaaggaaatttaaaaggaaat |
40799597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 146 - 396
Target Start/End: Original strand, 2249326 - 2249574
Alignment:
| Q |
146 |
aatgcggaacatttcccattatatctgaatttgtattaaccaagaagattaaataggaaatagaatacagaaacagttcttcaatcatcaagaaatatta |
245 |
Q |
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| T |
2249326 |
aatgcggaacattttccattatatcagaatttatattaaccgagaagagtagataagaaatagagtacagaaatagtgcttcaatcatgaagaaa---aa |
2249422 |
T |
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| Q |
246 |
ttgcatgtaatttgttccgttagaagaagtggcttcctctgtggaataacaattaacacaacaaagaaggaatatgatt-tttaaaacaaaaatagggaa |
344 |
Q |
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| T |
2249423 |
ttgcatataattcattatgctccaagaagtggcttcctttatggaacaaaaattaaaacaacaaagaagaaatacacttctttacaactaagataaggaa |
2249522 |
T |
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| Q |
345 |
tatgtatatgcaattgtttaatgtaaatgtagtaaaggtaaattgaaggaaa |
396 |
Q |
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| T |
2249523 |
cacgtgtatgcaagtgtttatagtaaatatggtaatgttaaattgaaggaaa |
2249574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 2249018 - 2249080
Alignment:
| Q |
10 |
tttcaccctttgcgacaattatggaataaggactcaaatcacatgcaaacaacaacataaaag |
72 |
Q |
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| T |
2249018 |
tttcaccctttgcaacaattatgaaattaggactcaaatgacatggagaaaacaacataaaag |
2249080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 51035591 - 51035649
Alignment:
| Q |
269 |
aagaagtggcttcctctgtggaataacaattaacacaacaaagaaggaatatgattttt |
327 |
Q |
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| T |
51035591 |
aagaagtggcttcctctatggaacaaaaattaacactacaaagaaggaatatgtttttt |
51035649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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