View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994R-Insertion-15 (Length: 247)
Name: NF2994R-Insertion-15
Description: NF2994R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994R-Insertion-15 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 19751470 - 19751236
Alignment:
| Q |
12 |
ttaaacctgcaaaactgtaactcggtattagttaacttgagcattaagctacactattactatagtgtatcgtacataaagtgagtaatctaaccatata |
111 |
Q |
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| T |
19751470 |
ttaaacctgcaaaactgtaactcggtattagttaacttgagcttta-gctacactattactatagtgtatggtacatagagtgagtaatctaaccatata |
19751372 |
T |
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| Q |
112 |
gtagttagtgccagctgttaattggtaggaagatctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcga |
211 |
Q |
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| T |
19751371 |
gtagttagtgccagctgttaattggtaggaagatctaatagctagttagaacaatgacttctatatatagatgaaatgtaacaaactcgacacaattcga |
19751272 |
T |
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| Q |
212 |
taaacagttttcattatctcagatttcttcttcttc |
247 |
Q |
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| T |
19751271 |
taaacagttttcattttctcagatttcttcttcttc |
19751236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 1820390 - 1820277
Alignment:
| Q |
129 |
ttaattggtaggaagatctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcgataaacagttttcattat |
228 |
Q |
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| T |
1820390 |
ttaattggttggaagatctaa--gttagttagaactataggttctatatatagatcaaccgtaacaaactcaacacaattcgataaaca-ttttaatttt |
1820294 |
T |
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| Q |
229 |
ctcagatttcttcttct |
245 |
Q |
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| T |
1820293 |
ctgagatttcttcttct |
1820277 |
T |
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