View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994R-Insertion-16 (Length: 225)
Name: NF2994R-Insertion-16
Description: NF2994R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994R-Insertion-16 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 7092064 - 7091860
Alignment:
| Q |
9 |
aaaagcatgtccatgataagagaaaactttgatagtaaattgaaaaactctaatagacaactgcaagtcaaagactcctgctgagatacttacaaaattc |
108 |
Q |
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| T |
7092064 |
aaaagcatgtccatgataagagactactttgatagtaaattgaaaaactttaatagacaactgcaagtgaaagattcctgctgagatacttacaaaattc |
7091965 |
T |
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| Q |
109 |
ttgcaaacatcacatcttgggtgatacttctccctgtagcaggatttatggtaaggtcggtcgctagacatggaaaactgtaaa-gaacaaatggatatc |
207 |
Q |
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| T |
7091964 |
ttgcaaacatcacatcttgggtgatgcttctccctgtagcaggatttatggtaaggacggttgctagacatggaaaactgtaaaggaacaaatggatatc |
7091865 |
T |
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| Q |
208 |
caagt |
212 |
Q |
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||||| |
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| T |
7091864 |
caagt |
7091860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 7099106 - 7098979
Alignment:
| Q |
86 |
ctgctgagatacttacaaaattcttgcaaacatcacatcttgggtgatacttctccctgtagcaggatttatggtaaggtcggtcgctagacatggaaaa |
185 |
Q |
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| T |
7099106 |
ctgctgagatacttacaaaattcttgcaaacatcacatcttgggtgatacttctccctgtagcaggatttatggtaaggtcggttgctagacatggaaaa |
7099007 |
T |
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| Q |
186 |
ctgtaaa-gaacaaatggatatccaagt |
212 |
Q |
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| T |
7099006 |
ctgtaaaggaacaaatgtatatccaagt |
7098979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 7104182 - 7104101
Alignment:
| Q |
9 |
aaaagcatgtccatgataagagaaaactttgatagtaaattgaaaaactctaatagacaactgcaagtcaaagactcctgct |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7104182 |
aaaagcatgtccatgataagagaaaactttgatagtaaattgaaaaactctaatagacaactgcaagtgaaagactcctgct |
7104101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 33407703 - 33407797
Alignment:
| Q |
95 |
tacttacaaaattcttgcaaacatcacatcttgggtgatacttctccctgtagcaggatttatggtaaggtcggtcgctagacatggaaaactgt |
189 |
Q |
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|||||||||| |||||||||||||||| |||||||||| | |||| | ||||| |||||||||||||| || | | |||||||||| ||||| |
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| T |
33407703 |
tacttacaaagatcttgcaaacatcacaccttgggtgatgcagctccttatagcatgatttatggtaaggacgattcccagacatggaatactgt |
33407797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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