View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994R-Insertion-2 (Length: 925)
Name: NF2994R-Insertion-2
Description: NF2994R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994R-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 716; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 9 - 913
Target Start/End: Original strand, 34579572 - 34580474
Alignment:
| Q |
9 |
gatatgtactagtattaattcttcttcctccttctaaaatagtttcaagtccagctatatgccaaccaagcaataatatcaatcagaaactcagctataa |
108 |
Q |
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| T |
34579572 |
gatatgtactagtattaattcttcttcctccttctaaaatagtttcaagtccagctatatgccaaccaagcaataatatcaatcacaaactcagctataa |
34579671 |
T |
|
| Q |
109 |
tcgttgttgcatagtcatagtcatgcttcattacattggaactcatgaaattcattacttttataaccttatggttatagaagtatggtgtgtattatgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34579672 |
tcgttgttgcatagtcatagtcatgcttcattacattggaactcatgaaattcattacttttataaccttatggttatagaagtatggtgtgtattatgt |
34579771 |
T |
|
| Q |
209 |
aactatatagttgtagataatgtttcttgtattatttgaaaaattgtaagtccacctgcacttaatgagatatatatgaattgcaacaaataagtcaaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34579772 |
aactatatagttgtagataatgtttcttgtattatttgaaaaattgtaagtccacctgcacttaatgagatatatatgaattgcaacaaataagtcaaat |
34579871 |
T |
|
| Q |
309 |
gattgaatactgatgagcatgcaactagcttaagcttctacacattcataatttatttatggaaaatgctaaccaataccgggagaaaccggtcaagg-- |
406 |
Q |
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| T |
34579872 |
gattgaatactgatgagcatgcaactagcttaagcttctacacattcataatttatttatgaaaaatgctaaccaataccgtcagaaaccggtcaaggaa |
34579971 |
T |
|
| Q |
407 |
----atataatagtattgtattgaagtttgtgtaatcaattcctcaaacgtataaaacatgttgtttcaacttaaaacttgtttttctactactttaatc |
502 |
Q |
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| T |
34579972 |
ggaaatataatagtattgtattgaagtttgtgtaatcaattcctcaaacgtgtaaaaaatattgtttcaacttaaaacgtgtttttctactaccttaatt |
34580071 |
T |
|
| Q |
503 |
agtgtttcagagacatcggttagtaaga-cctttatttatttatttccttgctatgttccaatttgtccttttagagcaagtagctcataatgtcaggtc |
601 |
Q |
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| T |
34580072 |
agtgtttcagagatactggttagtaggaccctttatttatttatttccttgctatgttccaatttgtccttttagagcaagttgctcataatgtcaggtc |
34580171 |
T |
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| Q |
602 |
aatattcttgttttactgatctgagtagttccgatattttgggttgattgaagtatctttaaagcaacttggtgaatttttcatgttaattacaataagt |
701 |
Q |
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| T |
34580172 |
aatattcttgttttactgatctg---agttccgatattttgggttgattgaagtatctttaaagcaacttggtgaattttccatattaattacaataagt |
34580268 |
T |
|
| Q |
702 |
aattctcatgtgatataatgtttgtataattttatacatatatagctgttacaagcagctagctttacttggtgaattgagcatgcagaatgatttctaa |
801 |
Q |
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| T |
34580269 |
aattctcatgtggtataatgtttgcataattttatacatatatagctgttacaagcagctagc-ttacttggtgaactgagtatgcagaatgatttctaa |
34580367 |
T |
|
| Q |
802 |
ccaaatgggatttgatatatatattgttgagacgcccatctcaataacgtagtataatgggttgtataaatttggctaaattacattttcgtggattgga |
901 |
Q |
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|||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | || || |
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| T |
34580368 |
ccaaat-ggatttg--atatatattgttgagacg-ccatctcaataacgtagtataat-ggttgtataaattttgctaaattacattttccgtgctttga |
34580462 |
T |
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| Q |
902 |
gttatttttaga |
913 |
Q |
| |
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|||||||||||| |
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| T |
34580463 |
gttatttttaga |
34580474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 407 - 488
Target Start/End: Original strand, 41143808 - 41143890
Alignment:
| Q |
407 |
atataatagtattgtattgaagtttgtgtaatcaattcctcaaacgtataaaacatgttgt-ttcaacttaaaacttgttttt |
488 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||| || ||||| | ||||| |||||||||||||||| |||| |
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| T |
41143808 |
atataatagtattgtattggaacttgtgtaatcaattcctcaaaagtgtaaaaaacgttgtcttcaacttaaaacttgctttt |
41143890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 488
Target Start/End: Complemental strand, 41128877 - 41128795
Alignment:
| Q |
407 |
atataatagtattgtattgaagtttgtgtaatcaattcctcaaacgtataaaacatgttgt-ttcaacttaaaacttgttttt |
488 |
Q |
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||||||||||||| ||||| | ||||||||||||||||||||| || ||||| | ||||| ||||||| ||||||||||||| |
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| T |
41128877 |
atataatagtattatattggaacttgtgtaatcaattcctcaaaagtgtaaaaaacgttgtcttcaactgaaaacttgttttt |
41128795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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