View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2994R-Insertion-3 (Length: 920)

Name: NF2994R-Insertion-3
Description: NF2994R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2994R-Insertion-3
NF2994R-Insertion-3
[»] chr8 (4 HSPs)
chr8 (141-526)||(33823313-33823694)
chr8 (617-876)||(33823785-33824047)
chr8 (8-67)||(33823180-33823239)
chr8 (639-747)||(28437305-28437413)
[»] chr4 (4 HSPs)
chr4 (638-777)||(23663555-23663694)
chr4 (644-690)||(35721705-35721751)
chr4 (665-755)||(45763667-45763757)
chr4 (637-690)||(22483493-22483546)
[»] chr5 (2 HSPs)
chr5 (641-783)||(13481013-13481155)
chr5 (666-723)||(18198182-18198239)
[»] chr7 (1 HSPs)
chr7 (644-783)||(8132030-8132169)
[»] chr2 (4 HSPs)
chr2 (668-771)||(41335315-41335418)
chr2 (644-722)||(3591840-3591918)
chr2 (641-693)||(3945955-3946007)
chr2 (665-750)||(24563321-24563406)
[»] chr1 (1 HSPs)
chr1 (665-695)||(34645998-34646028)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-154; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 141 - 526
Target Start/End: Original strand, 33823313 - 33823694
Alignment:
Q  141 tcatggaagattcattattggctttattatatgcattcttgatatcccctaattctatataattctttgggaacaaactagtaccaaactgccaataaag 240  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823313 tcatggaagattcattattggctttattatatgcattcatgatatcccctaattctatataattctttgggaacaaactagtaccaaactgccaataaag 33823412  T
Q  241 ctagcaaattgaattctcaaaggcaagtgtcatagtagagttctacacacannnnnnnnnnnnnnnnnnnnnatacaaacaacaaaccgacttgctttat 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||||||    
T  33823413 ctagcaaattgaattctcaaaggcaagtgtcatagtagagttctacacac----tctctctctctcactctcatacaaacaacaaaccgacttgctttat 33823508  T
Q  341 cttttctccactaacacaaaaagactcaccacccttttgcttttctgnnnnnnnnnnggattgttgtagctagatccacaacaaaactaaagaaagatga 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  33823509 cttttctccactaacacaaaaagactcaccacccttttgcttttctgttttttttttggattgttgtagctagatccacaacaaaactaaagaaagatga 33823608  T
Q  441 tccaagaactctttggtaatggtgctagtgctaccctcacatcaagtgaaagaaactactcttccattaatgggggagttttactt 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33823609 tccaagaactctttggtaatggtgctagtgctaccctcacatcaagtgaaagaaactactcttccattaatggaggagttttactt 33823694  T

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Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 617 - 876
Target Start/End: Original strand, 33823785 - 33824047
Alignment:
Q  617 tcatcagaaaaccaacaacatctaaagtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatt 716  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823785 tcatcagaaaaccaacaacatctaaggtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatt 33823884  T
Q  717 tctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaaacgttccaattggaggtggctgcccggaaaacaagagcatcggtgcctc-aa 815  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||    
T  33823885 tctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaaacgttccaattggaggtggctgccggaaaaacaagagcatcggtgcctcaaa 33823984  T
Q  816 caacacggcaaaaatagctacaaacaagatg-aaacagtttcttcttc-gagtttattggaag 876  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  33823985 caacgcggcaaaaatagctacaaacaagatgaaaacagtttcttcttcggagtttattggaag 33824047  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 33823180 - 33823239
Alignment:
Q  8 aaatattacattaaaaacatacttggaaaattaatgtaaaatataattacaccgtctctt 67  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33823180 aaatattacattaaaaacatacttggaaaattattgtaaaatataattacaccgtctctt 33823239  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 747
Target Start/End: Original strand, 28437305 - 28437413
Alignment:
Q  639 taaagtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgtta 738  Q
    |||| ||||||||||| || ||  ||||||||||||| ||||||||||||||||| |  |||||||| ||  | ||||||||||| |||||| |  | ||    
T  28437305 taaaatgtccaagatgtgattctccaaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaagata 28437404  T
Q  739 ttggacaaa 747  Q
    |||||||||    
T  28437405 ttggacaaa 28437413  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 638 - 777
Target Start/End: Original strand, 23663555 - 23663694
Alignment:
Q  638 ctaaagtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgtt 737  Q
    |||||||||||  | ||||| ||| | ||||| |||||||| |||| ||||||||| | ||||||||| ||||| || ||||||||||||||  | ||||    
T  23663555 ctaaagtgtcctcgttgcgattcaaccaacactaaattttgctacttcaacaactacagcctcactcaacctcgtcacttctgcaagacatgtaggcgtt 23663654  T
Q  738 attggacaaaaggaggtgctttaagaaacgttccaattgg 777  Q
    ||||||||| ||| |||||  | ||||| |||||| ||||    
T  23663655 attggacaagagggggtgcacttagaaatgttccagttgg 23663694  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 644 - 690
Target Start/End: Original strand, 35721705 - 35721751
Alignment:
Q  644 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaa 690  Q
    ||||||||||| || ||| |||||||||| |||||||||||||||||    
T  35721705 tgtccaagatgtgattcaacaaacacaaagttttgttactacaacaa 35721751  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 755
Target Start/End: Complemental strand, 45763757 - 45763667
Alignment:
Q  665 aacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaaggaggtg 755  Q
    ||||| ||||| ||||||||||| ||||| |||||| | |||||||| || |||||||| |  ||||| ||||| ||||| ||||| ||||    
T  45763757 aacaccaaattctgttactacaataactacaacctctcccagcctcgtcacttctgcaaaaactgccgacgttactggactaaaggcggtg 45763667  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 690
Target Start/End: Complemental strand, 22483546 - 22483493
Alignment:
Q  637 tctaaagtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaa 690  Q
    |||||| ||||||||||| ||||||   ||||| ||||||||||||||||||||    
T  22483546 tctaaaatgtccaagatgtgactcaaacaacaccaaattttgttactacaacaa 22483493  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 641 - 783
Target Start/End: Original strand, 13481013 - 13481155
Alignment:
Q  641 aagtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttatt 740  Q
    |||||||||||||| |||||| | ||||||||||| || |||||||||||||||| | | || || ||  | ||||||||||| |||||  |  | ||||    
T  13481013 aagtgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatatt 13481112  T
Q  741 ggacaaaaggaggtgctttaagaaacgttccaattggaggtgg 783  Q
    |||||||||| || |||||| | ||||||||||| || |||||    
T  13481113 ggacaaaaggtggagctttacgcaacgttccaatcggtggtgg 13481155  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 723
Target Start/End: Original strand, 18198182 - 18198239
Alignment:
Q  666 acacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaa 723  Q
    ||||||||||||| |||||||||||||| ||| |||  |||||||| || ||||||||    
T  18198182 acacaaaattttgctactacaacaactacaacgtcaaacagcctcgacacttctgcaa 18198239  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 644 - 783
Target Start/End: Complemental strand, 8132169 - 8132030
Alignment:
Q  644 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattgga 743  Q
    ||||||||||| || ||| |||||||||| || || |||||||||||||| || ||  | || || |||||||| ||||| || || |||||||||||||    
T  8132169 tgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattgga 8132070  T
Q  744 caaaaggaggtgctttaagaaacgttccaattggaggtgg 783  Q
    | ||||| |||||  |  ||||||||||  ||||||||||    
T  8132069 ctaaaggtggtgcacttcgaaacgttcctgttggaggtgg 8132030  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 668 - 771
Target Start/End: Original strand, 41335315 - 41335418
Alignment:
Q  668 acaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaaacg 767  Q
    |||||||||||||||||||||||||||||| |  |||| ||  | || || |||||||||||  | ||||||||||||| ||| ||||| |||||||| |    
T  41335315 acaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttattggacaagagggggtgcattaagaaatg 41335414  T
Q  768 ttcc 771  Q
    ||||    
T  41335415 ttcc 41335418  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 644 - 722
Target Start/End: Original strand, 3591840 - 3591918
Alignment:
Q  644 tgtccaagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgca 722  Q
    ||||||||||| |||||  |||| || |||||||||||||||||||||||||||    |||| ||||||||||||||||    
T  3591840 tgtccaagatgtgactctacaaataccaaattttgttactacaacaactataacaagtctcaacctcgccatttctgca 3591918  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 641 - 693
Target Start/End: Complemental strand, 3946007 - 3945955
Alignment:
Q  641 aagtgtccaagatgcgactcatcaaacacaaaattttgttactacaacaacta 693  Q
    ||||||||| | || ||||||||||||||||| ||||||||||||||||||||    
T  3946007 aagtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaacta 3945955  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 665 - 750
Target Start/End: Original strand, 24563321 - 24563406
Alignment:
Q  665 aacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaagg 750  Q
    ||||| ||||| || |||||||||||||| |||||| |||||||||| |||||||| || |  |||||||| || ||||| |||||    
T  24563321 aacacgaaattctgctactacaacaactacaacctctctcagcctcgtcatttctgtaaaaactgccgtcgctactggaccaaagg 24563406  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 695
Target Start/End: Original strand, 34645998 - 34646028
Alignment:
Q  665 aacacaaaattttgttactacaacaactata 695  Q
    |||||||||||||||||||||||||||||||    
T  34645998 aacacaaaattttgttactacaacaactata 34646028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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