View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2994R-Insertion-4 (Length: 885)

Name: NF2994R-Insertion-4
Description: NF2994R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2994R-Insertion-4
NF2994R-Insertion-4
[»] chr7 (10 HSPs)
chr7 (8-685)||(1112561-1113232)
chr7 (768-885)||(1113253-1113370)
chr7 (589-670)||(1067829-1067910)
chr7 (711-769)||(1068343-1068401)
chr7 (711-769)||(7951213-7951271)
chr7 (589-651)||(1080942-1081003)
chr7 (811-885)||(48491219-48491292)
chr7 (408-512)||(27663992-27664095)
chr7 (811-885)||(47674418-47674492)
chr7 (811-885)||(48599971-48600044)
[»] chr4 (10 HSPs)
chr4 (285-515)||(26135922-26136151)
chr4 (811-885)||(6655357-6655431)
chr4 (806-870)||(34570894-34570958)
chr4 (811-885)||(5429299-5429373)
chr4 (811-885)||(2209122-2209195)
chr4 (811-885)||(3909716-3909790)
chr4 (811-845)||(12740052-12740086)
chr4 (811-845)||(12745930-12745964)
chr4 (811-845)||(12748258-12748292)
chr4 (543-596)||(10989822-10989875)
[»] chr3 (10 HSPs)
chr3 (811-885)||(23410805-23410879)
chr3 (811-885)||(49200144-49200218)
chr3 (811-874)||(23392301-23392364)
chr3 (811-885)||(34490634-34490707)
chr3 (833-885)||(44331922-44331974)
chr3 (833-884)||(24694713-24694764)
chr3 (811-885)||(29812682-29812756)
chr3 (811-885)||(5236932-5237005)
chr3 (811-885)||(44331188-44331262)
chr3 (543-596)||(17921177-17921230)
[»] chr2 (5 HSPs)
chr2 (811-885)||(36318485-36318559)
chr2 (779-845)||(39284485-39284550)
chr2 (789-885)||(17057729-17057826)
chr2 (789-885)||(17085712-17085809)
chr2 (830-885)||(2837319-2837373)
[»] scaffold0286 (1 HSPs)
scaffold0286 (811-885)||(10959-11033)
[»] chr1 (10 HSPs)
chr1 (811-885)||(4553123-4553197)
chr1 (768-885)||(37033762-37033878)
chr1 (408-516)||(21420524-21420633)
chr1 (811-885)||(11348121-11348194)
chr1 (535-596)||(21420690-21420751)
chr1 (811-845)||(30476941-30476975)
chr1 (811-885)||(31658858-31658931)
chr1 (811-885)||(44454779-44454852)
chr1 (811-885)||(49917969-49918042)
chr1 (768-845)||(28223937-28224013)
[»] chr8 (7 HSPs)
chr8 (769-885)||(42435684-42435799)
chr8 (833-885)||(43036064-43036116)
chr8 (830-885)||(30142980-30143035)
chr8 (811-885)||(4731278-4731351)
chr8 (811-885)||(4743669-4743743)
chr8 (811-845)||(33351790-33351824)
chr8 (543-596)||(18062729-18062782)
[»] scaffold0066 (1 HSPs)
scaffold0066 (812-882)||(20893-20963)
[»] chr5 (10 HSPs)
chr5 (535-596)||(37535798-37535859)
chr5 (769-845)||(535502-535577)
chr5 (548-596)||(37644923-37644971)
chr5 (811-885)||(19806047-19806120)
chr5 (543-596)||(10245796-10245849)
chr5 (856-885)||(11181411-11181440)
chr5 (535-596)||(37597045-37597105)
chr5 (535-596)||(37720738-37720798)
chr5 (535-596)||(37826599-37826660)
chr5 (812-845)||(42428933-42428966)
[»] chr6 (2 HSPs)
chr6 (811-885)||(33160809-33160882)
chr6 (832-885)||(21272525-21272578)


Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 8 - 685
Target Start/End: Original strand, 1112561 - 1113232
Alignment:
Q  8 aatctatacccgtttggattgatggtaattattgagaataaaaattattgttccgttgaacttcgaaatcaagtaaaatgacaagtnnnnnnnnntagat 107  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  | |            |||||    
T  1112561 aatctctacccgtttggattgatggtaattattgacaataaaaattattgttccgttgaacttcgaaatcaagtaaaaaaaaa------------tagat 1112648  T
Q  108 gta-tatcttctcccgctgaacctgtaagcatttct----agcaacacaacttaattgttagctacaaaacagaagtaaaagaataacaaagcaccatca 202  Q
    | | ||||||||||||||||||||||||||||||||    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1112649 ggaatatcttctcccgctgaacctgtaagcatttctttctagaaacacaacttaattgttagctacaaagcagaagtaaaagaataacaaagcaccatca 1112748  T
Q  203 gaaggaataaaatcattaattatattgagaattaggtattgacattcattttgctactgcagttgtctttctatcattatatcatacattgattttaaca 302  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  1112749 gaaagaataaaatcattaattatattgagaattaggtattgacattcattttgctactgctattgtctttctatcattatatcatacattgattttgaca 1112848  T
Q  303 ttcatgattattgaaatgctggatatttggatgt---ttgttgttgtatatttttcaagtgggacataaccttatgtcatgtttttcttttaacgagtac 399  Q
    ||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||  | ||||| ||||||||||||||||| || || |||    
T  1112849 ttcatgattattgaaatgctggacatttggatgtttgttgttgttgtatatttttcaagtggg-gacaacctcatgtcatgtttttctttcaatgattac 1112947  T
Q  400 catgcattttacctataaataatacctcatgacatgtttttac--tattaacgagtacaatgaaatatttatatatttttctctaatgagcatgactcaa 497  Q
    ||||||| ||| |||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1112948 catgcatattagctataaataatacctcatgacatgtttttactatattgacgagtacaatgaaatatttatatatttttctctaatgagcatgactcaa 1113047  T
Q  498 ttaaaaggaaattgagtaccctactacctggattgatgaacaatacttaagttgtggactgaatctgcagggggtcgtatccatggtcgagtttatggtc 597  Q
    |||||||||||||||||||||||||||||  |||||| |||||| |||||||||||||||||||||||| |||||||||| | |||||||||||||||||    
T  1113048 ttaaaaggaaattgagtaccctactacctacattgataaacaatgcttaagttgtggactgaatctgca-ggggtcgtattcgtggtcgagtttatggtc 1113146  T
Q  598 aaacaagattacaatatgtgaatgattcgaaatctatgataggtcaaatagaaactcgaggaagtgtttgatctccactttgaacaag 685  Q
    |||||| |||||||||||| ||||||| |||| |||||||||||||||||||||||  |||| |||||||   |||||||||||||||    
T  1113147 aaacaaaattacaatatgtaaatgatttgaaacctatgataggtcaaatagaaactttaggatgtgtttg--gtccactttgaacaag 1113232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 768 - 885
Target Start/End: Original strand, 1113253 - 1113370
Alignment:
Q  768 ttgttgtaaagtgccttcaatttgtgattgtgaggaaaaacacaatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgtttt 867  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  1113253 ttgttgtaaagtgccttctatttgtgattgtgaggaaaaacacaatcgtgacacgatttagcaagcgtgtcacgatttcgcaatgccaatagcatatttt 1113352  T
Q  868 gcagggtgtccaatcgtg 885  Q
    ||| ||||||||||||||    
T  1113353 gcatggtgtccaatcgtg 1113370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 589 - 670
Target Start/End: Original strand, 1067829 - 1067910
Alignment:
Q  589 tttatggtcaaacaagattacaatatgtgaatgattcgaaatctatgataggtcaaatagaaactcgaggaagtgtttgatc 670  Q
    |||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| ||||||||||    
T  1067829 tttatgctcaaacaagattacaatatgtgaatgatttgaaacctatgataggtcaaatagaaactccaggatgtgtttgatc 1067910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 711 - 769
Target Start/End: Original strand, 1068343 - 1068401
Alignment:
Q  711 tacaatattcttgaattgatgtattttaattttgcataaaatatactagtatgtagttt 769  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1068343 tacaatattcttgaattgatgtattttaattttgcataaaatatacaagtatgtagttt 1068401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 711 - 769
Target Start/End: Original strand, 7951213 - 7951271
Alignment:
Q  711 tacaatattcttgaattgatgtattttaattttgcataaaatatactagtatgtagttt 769  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7951213 tacaatattcttgaattgatgtgttttaattttgcataaaatatactagtatgtagttt 7951271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 589 - 651
Target Start/End: Original strand, 1080942 - 1081003
Alignment:
Q  589 tttatggtcaaacaagattacaatatgtgaatgattcgaaatctatgataggtcaaatagaaa 651  Q
    |||||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  1080942 tttatgctcaaacaagattacaatatgtgaatgatt-gaaacttatgataggtcaaatagaaa 1081003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 48491219 - 48491292
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    |||||||||||||||| |||| |||||||||| ||| ||||| |  |||| ||||||||||||||||||||||||    
T  48491219 aatcgtgacacgatttggcaaccgtgtcacgaattcgcaatgtcgtgagc-tgttttgcagggtgtccaatcgtg 48491292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 512
Target Start/End: Complemental strand, 27664095 - 27663992
Alignment:
Q  408 ttacctataaataatacctcatgacatgtttttactattaacgagtacaatgaaatatttata-tatttttctctaatgagcatgactcaattaaaagga 506  Q
    ||||||||||||||| ||| ||||||||||||| |  |||| || ||| |||||||||||||| | |||||||||| |||||| || ||| |||||| ||    
T  27664095 ttacctataaataatgcct-atgacatgttttt-cggttaatgaataccatgaaatatttatattttttttctctattgagcaggaatcatttaaaaaga 27663998  T
Q  507 aattga 512  Q
    ||||||    
T  27663997 aattga 27663992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 885
Target Start/End: Complemental strand, 47674492 - 47674418
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcat-gttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||||||||| |||||||||||  | | ||   |||||| |||||||||||||||||||||||    
T  47674492 aatcgtgacacgatttagcaagcatgtcacgattt-tccaggcagtgagcatggttttgcagggtgtccaatcgtg 47674418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 885
Target Start/End: Complemental strand, 48600044 - 48599971
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   ||||||||||||||||  ||||| | ||||| ||||||||||||||  ||||||||    
T  48600044 aatcgtgacacgatttgtgaagcgtgtcacgattttgcaatgtcgagagc-tgttttgcagggtgcacaatcgtg 48599971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 285 - 515
Target Start/End: Complemental strand, 26136151 - 26135922
Alignment:
Q  285 catacattgattttaacattcatgattattgaaatgctggatatttggatgtttgttgttgtatatttttcaagtgggacataaccttatgtcatgtttt 384  Q
    |||||||||||||| |||||||||||| ||||| || |||| |||||||  ||||||| ||  || ||||||||| ||||  |||||  || ||||||||    
T  26136151 catacattgattttgacattcatgattgttgaattgttggacatttggagatttgttgctggttaattttcaagtaggac--aacctcttggcatgtttt 26136054  T
Q  385 tcttttaacgagtaccatgcattttacctataaataatacctcatgacatgtttttactattaacgagtacaatgaaatattta--tatatttttctcta 482  Q
    ||| |||| || |||||||||  ||||||||||||||| || |||||||| ||||| || ||||  |  |  ||||||||||||  ||||| ||||| ||    
T  26136053 tctgttaatgaataccatgcaaattacctataaataatgccacatgacatattttt-ctgttaatcaaaatcatgaaatatttatgtatatatttcttta 26135955  T
Q  483 atgagcatgactcaattaaaaggaaattgagta 515  Q
     |||||| |||||| |||||| |||||||||||    
T  26135954 ttgagcaggactcatttaaaaagaaattgagta 26135922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 6655357 - 6655431
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   | ||||||||||||||  |||||||  |||||||||||||||||||||||||||||    
T  6655357 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtg 6655431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 806 - 870
Target Start/End: Complemental strand, 34570958 - 34570894
Alignment:
Q  806 aacacaatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgca 870  Q
    |||| |||||||||||||||||||||||||||||||||||  ||| ||| | |||||||||||||    
T  34570958 aacagaatcgtgacacgatttagcaagcgtgtcacgattttccaacgccgaaagcatgttttgca 34570894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 5429299 - 5429373
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    |||| ||||||||||| | ||||||||||||||||  |||||   |||||||||||||||||||||| |||||||    
T  5429299 aatcatgacacgatttggtaagcgtgtcacgattttgcaatgttgagagcatgttttgcagggtgtctaatcgtg 5429373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 2209122 - 2209195
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   ||||||||||||||||  ||||| | ||||| |||||||||| ||| |||||||||    
T  2209122 aatcgtgacacgatttttgaagcgtgtcacgattttgcaatgtcgagagc-tgttttgcagagtgcccaatcgtg 2209195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 3909716 - 3909790
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   |||| |||||||||||  ||||| |  |||||||||||||| |||||| |||||||    
T  3909716 aatcgtgacacgatttttgaagcatgtcacgattttgcaatgtcgtgagcatgttttgcacggtgtcaaatcgtg 3909790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 845
Target Start/End: Complemental strand, 12740086 - 12740052
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgattt 845  Q
    ||||||||||||||||||||| |||||||||||||    
T  12740086 aatcgtgacacgatttagcaaacgtgtcacgattt 12740052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 845
Target Start/End: Complemental strand, 12745964 - 12745930
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgattt 845  Q
    |||||||||||||||||||||||||| ||||||||    
T  12745964 aatcgtgacacgatttagcaagcgtgacacgattt 12745930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 845
Target Start/End: Complemental strand, 12748292 - 12748258
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgattt 845  Q
    ||||||||||||||||||||| |||||||||||||    
T  12748292 aatcgtgacacgatttagcaaacgtgtcacgattt 12748258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 596
Target Start/End: Complemental strand, 10989875 - 10989822
Alignment:
Q  543 cttaagttgtggactgaatctgcagggggtcgtatccatggtcgagtttatggt 596  Q
    |||| ||||||||| || ||||||||||||||||  | ||||||||||||||||    
T  10989875 cttaggttgtggaccgagtctgcagggggtcgtactcgtggtcgagtttatggt 10989822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 811 - 885
Target Start/End: Complemental strand, 23410879 - 23410805
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||| ||||   ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  23410879 aatcgtgacacaatttgtgaagcgtgtcacgatttcgcaatgtcgagagcatgttttgcagggtgtccaatcgtg 23410805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 811 - 885
Target Start/End: Complemental strand, 49200218 - 49200144
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||  || ||||||||||||||  |||||||  |||||||||||||||||||||||||||||    
T  49200218 aatcgtgacacgattttacaggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtg 49200144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 811 - 874
Target Start/End: Complemental strand, 23392364 - 23392301
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggt 874  Q
    ||||||||||||||||   ||||||||||||||||||||||| | |||||||||||||||||||    
T  23392364 aatcgtgacacgatttgtgaagcgtgtcacgatttcacaatgtcgagagcatgttttgcagggt 23392301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 34490634 - 34490707
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    |||| ||||||||||| |||| |||||||||||||| ||||| | |||| |||||||||||||| ||||||||||    
T  34490634 aatcatgacacgatttggcaaccgtgtcacgatttcgcaatgtcgagag-atgttttgcagggtatccaatcgtg 34490707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 833 - 885
Target Start/End: Complemental strand, 44331974 - 44331922
Alignment:
Q  833 cgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    |||||||||||||| |||||||  ||| |||||||||||||||||||||||||    
T  44331974 cgtgtcacgatttcgcaatgccgtgagtatgttttgcagggtgtccaatcgtg 44331922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 833 - 884
Target Start/End: Original strand, 24694713 - 24694764
Alignment:
Q  833 cgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgt 884  Q
    |||||||||||||  ||||| |  ||||||||||||||||||||||||||||    
T  24694713 cgtgtcacgattttgcaatgtcgtgagcatgttttgcagggtgtccaatcgt 24694764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 29812682 - 29812756
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcat-gttttgcagggtgtccaatcgtg 885  Q
    |||||||||||||||||||||| ||||||||||||  | | ||   |||||| |||||||||||||||||||||||    
T  29812682 aatcgtgacacgatttagcaagtgtgtcacgattt-tctaggcagtgagcatggttttgcagggtgtccaatcgtg 29812756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 885
Target Start/End: Complemental strand, 5237005 - 5236932
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   ||||||||||||||||  | ||||| |||||||||||| | | |||||||||||||    
T  5237005 aatcgtgacacgatttcataagcgtgtcacgatttggctatgccgagagcatgtttt-ctgagtgtccaatcgtg 5236932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 44331188 - 44331262
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    |||||||||||| ||| |||| |||||||||||||| |||||    ||| ||||||||| |||||| ||||||||    
T  44331188 aatcgtgacacgctttggcaaccgtgtcacgatttcgcaatgttgtgagtatgttttgctgggtgttcaatcgtg 44331262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 596
Target Start/End: Complemental strand, 17921230 - 17921177
Alignment:
Q  543 cttaagttgtggactgaatctgcagggggtcgtatccatggtcgagtttatggt 596  Q
    |||| ||||||||| || ||||||||||||||||  | ||||||||||||||||    
T  17921230 cttaggttgtggaccgagtctgcagggggtcgtactcgtggtcgagtttatggt 17921177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 811 - 885
Target Start/End: Complemental strand, 36318559 - 36318485
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   || |||||||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  36318559 aatcgtgacacgatttgtgaaacgtgtcacgatttcgcaatgtcgagagcatgttttgcagggtgtccaatcgtg 36318485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 779 - 845
Target Start/End: Original strand, 39284485 - 39284550
Alignment:
Q  779 tgccttcaatttgtgattgtgaggaaaaacacaatcgtgacacgatttagcaagcgtgtcacgattt 845  Q
    ||||||||| |||||||| || |||||| |||||||||||||||| || |||| |||||||||||||    
T  39284485 tgccttcaaattgtgatt-tggggaaaatcacaatcgtgacacgaattggcaaacgtgtcacgattt 39284550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 789 - 885
Target Start/End: Complemental strand, 17057826 - 17057729
Alignment:
Q  789 ttgtgattgtgaggaaaaacacaatcgtgacacgatttagcaagcgtgtcacgatttca-caatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    |||||||||||||||| |    ||||||||||| ||||   |||||||||||| |||   ||||| | ||||||||||||||||||||||||||||||    
T  17057826 ttgtgattgtgaggaacagagaaatcgtgacacaatttcataagcgtgtcacgtttttggcaatgtcgagagcatgttttgcagggtgtccaatcgtg 17057729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 789 - 885
Target Start/End: Complemental strand, 17085809 - 17085712
Alignment:
Q  789 ttgtgattgtgaggaaaaacacaatcgtgacacgatttagcaagcgtgtcacgatttca-caatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    |||||||||||||||| |    ||||||||||| ||||   |||||||||||| |||   ||||| | ||||||||||||||||||||||||||||||    
T  17085809 ttgtgattgtgaggaacagagaaatcgtgacacaatttcataagcgtgtcacgtttttggcaatgtcgagagcatgttttgcagggtgtccaatcgtg 17085712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 830 - 885
Target Start/End: Complemental strand, 2837373 - 2837319
Alignment:
Q  830 aagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||  ||||| |||||||  |||||||||||||||||||||||    
T  2837373 aagcgtgtcacgattttgcaatgtcaagagcg-gttttgcagggtgtccaatcgtg 2837319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 10959 - 11033
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   | ||||||||||||||  |||||||  |||||||||||||||||||||||||||||    
T  10959 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtg 11033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 811 - 885
Target Start/End: Complemental strand, 4553197 - 4553123
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   ||||||||||||||||| |||||||  || ||||||||||||||| ||||||||||    
T  4553197 aatcgtgacacgatttgtgaagcgtgtcacgatttcgcaatgccgtgaacatgttttgcagggtatccaatcgtg 4553123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 768 - 885
Target Start/End: Complemental strand, 37033878 - 37033762
Alignment:
Q  768 ttgttgtaaagtgccttcaatttgtgattgtgaggaaaaacacaatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgtttt 867  Q
    |||||||||||||||||||||||||| ||  ||  | | | | ||||||||||||||||   | ||||||||||||||  ||||| |  |||||||||||    
T  37033878 ttgttgtaaagtgccttcaatttgtgttttagaaaacagaga-aatcgtgacacgatttcataggcgtgtcacgattttgcaatgtcgtgagcatgtttt 37033780  T
Q  868 gcagggtgtccaatcgtg 885  Q
    ||||||||||||||||||    
T  37033779 gcagggtgtccaatcgtg 37033762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 408 - 516
Target Start/End: Original strand, 21420524 - 21420633
Alignment:
Q  408 ttacctataaataatacctcatgacatgtttttactattaacgagtacaatgaaatatttatata--tttttctctaatgagcatgactcaattaaaagg 505  Q
    |||||||||||||||  || ||||||||||||| |  |||| || ||| ||||||||||||||||  |||||||||| |||||| || ||| |||||| |    
T  21420524 ttacctataaataatgtct-atgacatgttttttcggttaatgaataccatgaaatatttatatatttttttctctattgagcaggaatcatttaaaaag 21420622  T
Q  506 aaattgagtac 516  Q
    ||||| |||||    
T  21420623 aaattaagtac 21420633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 11348121 - 11348194
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   ||||||||||||||||  ||||| | ||||| |||||||||||||||| |||||||    
T  11348121 aatcgtgacacgatttgtgaagcgtgtcacgattttgcaatgtcgagagc-tgttttgcagggtgtctaatcgtg 11348194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 596
Target Start/End: Original strand, 21420690 - 21420751
Alignment:
Q  535 gaacaatacttaagttgtggactgaatctgcagggggtcgtatccatggtcgagtttatggt 596  Q
    |||||| ||||| |||||||||  | |||||||||||||||| || ||||||||||||||||    
T  21420690 gaacaaaacttaggttgtggaccaagtctgcagggggtcgtacccgtggtcgagtttatggt 21420751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 845
Target Start/End: Complemental strand, 30476975 - 30476941
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgattt 845  Q
    |||||||||||||||||| ||||||||||||||||    
T  30476975 aatcgtgacacgatttagtaagcgtgtcacgattt 30476941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 31658858 - 31658931
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   | ||||||||||||||  ||||| | ||||| |||||||||||||| |||||||||    
T  31658858 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgtcgagagc-tgttttgcagggtgcccaatcgtg 31658931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 44454779 - 44454852
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   ||||||||||||||||  | ||||| |||||||||||| | | |||||||||||||    
T  44454779 aatcgtgacacgatttcataagcgtgtcacgatttggctatgccgagagcatgtttt-ctgagtgtccaatcgtg 44454852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 49917969 - 49918042
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   ||||||||||| ||||  ||||| | ||||| |||||||||||||| |||||||||    
T  49917969 aatcgtgacacgatttgtgaagcgtgtcacaattttgcaatgtcgagagc-tgttttgcagggtgcccaatcgtg 49918042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 845
Target Start/End: Complemental strand, 28224013 - 28223937
Alignment:
Q  768 ttgttgtaaagtgccttcaatttgtgattgtgaggaaaaacacaatcgtgacacgatttagcaagcgtgtcacgattt 845  Q
    |||||| ||| || |||||| |||||||| || |||||| |||||||||||||||| || |||| ||||||| |||||    
T  28224013 ttgttgaaaattgacttcaaattgtgatt-tggggaaaatcacaatcgtgacacgaattggcaaacgtgtcatgattt 28223937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 769 - 885
Target Start/End: Complemental strand, 42435799 - 42435684
Alignment:
Q  769 tgttgtaaagtgccttcaatttgtgattgtgaggaaaaacacaatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttg 868  Q
    ||||||||||||||||||||||||| ||  ||  | | | | ||||||||||| ||||   | ||||||||||||||  |||||||  ||||||||||||    
T  42435799 tgttgtaaagtgccttcaatttgtgttttagaaaacagaga-aatcgtgacacaatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttg 42435701  T
Q  869 cagggtgtccaatcgtg 885  Q
    |||||||||||||||||    
T  42435700 cagggtgtccaatcgtg 42435684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 833 - 885
Target Start/End: Original strand, 43036064 - 43036116
Alignment:
Q  833 cgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    |||| ||||||||| |||||||  |||||||||||||||||||||||||||||    
T  43036064 cgtgacacgatttcgcaatgccgtgagcatgttttgcagggtgtccaatcgtg 43036116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 830 - 885
Target Start/End: Original strand, 30142980 - 30143035
Alignment:
Q  830 aagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||| ||||  |  |||||||||||||||||||||||||||||    
T  30142980 aagcgtgtcacgatttcgcaatttcgtgagcatgttttgcagggtgtccaatcgtg 30143035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 4731278 - 4731351
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||  ||| |||||||||||||| ||||| |  |||| |||||| |||||||||||||||||    
T  4731278 aatcgtgacacgatttgacaaccgtgtcacgatttcgcaatgtcgtgagc-tgttttacagggtgtccaatcgtg 4731351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 811 - 885
Target Start/End: Complemental strand, 4743743 - 4743669
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    |||||||||||||||    |||| |||||| ||||| |||||||  |||||||||||| ||||||||||||||||    
T  4743743 aatcgtgacacgattagtgaagcatgtcacaatttcgcaatgccgtgagcatgttttgaagggtgtccaatcgtg 4743669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 811 - 845
Target Start/End: Original strand, 33351790 - 33351824
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgattt 845  Q
    |||||||||||||||||||||||||||||||||||    
T  33351790 aatcgtgacacgatttagcaagcgtgtcacgattt 33351824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 596
Target Start/End: Original strand, 18062729 - 18062782
Alignment:
Q  543 cttaagttgtggactgaatctgcagggggtcgtatccatggtcgagtttatggt 596  Q
    |||| ||||||||| || ||||||||||||||||  | ||||||||||||||||    
T  18062729 cttaggttgtggaccgagtctgcagggggtcgtactcgtggtcgagtttatggt 18062782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 812 - 882
Target Start/End: Complemental strand, 20963 - 20893
Alignment:
Q  812 atcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatc 882  Q
    |||||||||||||||   ||||||||||||||||  ||||| |  ||||||||||||||||||||||||||    
T  20963 atcgtgacacgatttgtgaagcgtgtcacgattttgcaatgtcgtgagcatgttttgcagggtgtccaatc 20893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 596
Target Start/End: Complemental strand, 37535859 - 37535798
Alignment:
Q  535 gaacaatacttaagttgtggactgaatctgcagggggtcgtatccatggtcgagtttatggt 596  Q
    |||||| ||||  ||||||||| || |||||||||||||||| || ||||||||||||||||    
T  37535859 gaacaaaacttgggttgtggaccgagtctgcagggggtcgtacccgtggtcgagtttatggt 37535798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 845
Target Start/End: Original strand, 535502 - 535577
Alignment:
Q  769 tgttgtaaagtgccttcaatttgtgattgtgaggaaaaacacaatcgtgacacgatttagcaagcgtgtcacgattt 845  Q
    ||||||||||||||||||| |||||||||||||||| |    ||||||||||||||||   ||||||||||| ||||    
T  535502 tgttgtaaagtgccttcaa-ttgtgattgtgaggaacagagaaatcgtgacacgatttcataagcgtgtcacaattt 535577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 548 - 596
Target Start/End: Complemental strand, 37644971 - 37644923
Alignment:
Q  548 gttgtggactgaatctgcagggggtcgtatccatggtcgagtttatggt 596  Q
    ||||||||| || |||||||||||||||| || ||||||||||||||||    
T  37644971 gttgtggaccgagtctgcagggggtcgtacccgtggtcgagtttatggt 37644923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 885
Target Start/End: Original strand, 19806047 - 19806120
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||   | ||||||||||||||  ||||| | ||||| |||||||||||||| |||||||||    
T  19806047 aatcgtgacacgatttgtgacgcgtgtcacgattttgcaatgtcgagagc-tgttttgcagggtgcccaatcgtg 19806120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 596
Target Start/End: Complemental strand, 10245849 - 10245796
Alignment:
Q  543 cttaagttgtggactgaatctgcagggggtcgtatccatggtcgagtttatggt 596  Q
    |||| ||||||||| || ||||||||||||||||  | ||||||||||||||||    
T  10245849 cttaggttgtggaccgagtctgcagggggtcgtactcgtggtcgagtttatggt 10245796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 856 - 885
Target Start/End: Original strand, 11181411 - 11181440
Alignment:
Q  856 agagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||||||||||||||||||    
T  11181411 agagcatgttttgcagggtgtccaatcgtg 11181440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 596
Target Start/End: Complemental strand, 37597105 - 37597045
Alignment:
Q  535 gaacaatacttaagttgtggactgaatctgcagggggtcgtatccatggtcgagtttatggt 596  Q
    |||||| ||||  ||||||||| ||||||||||||| ||||| || ||||||||||||||||    
T  37597105 gaacaaaacttgggttgtggaccgaatctgcagggg-tcgtaaccgtggtcgagtttatggt 37597045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 596
Target Start/End: Complemental strand, 37720798 - 37720738
Alignment:
Q  535 gaacaatacttaagttgtggactgaatctgcagggggtcgtatccatggtcgagtttatggt 596  Q
    |||||| ||||  ||||||||| ||||||||||||| ||||| || ||||||||||||||||    
T  37720798 gaacaaaacttgggttgtggaccgaatctgcagggg-tcgtacccgtggtcgagtttatggt 37720738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 596
Target Start/End: Complemental strand, 37826660 - 37826599
Alignment:
Q  535 gaacaatacttaagttgtggactgaatctgcagggggtcgtatccatggtcgagtttatggt 596  Q
    |||||| ||||  ||||||||| || ||||||||||||| || || ||||||||||||||||    
T  37826660 gaacaaaacttgggttgtggaccgagtctgcagggggtcatacccgtggtcgagtttatggt 37826599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 845
Target Start/End: Complemental strand, 42428966 - 42428933
Alignment:
Q  812 atcgtgacacgatttagcaagcgtgtcacgattt 845  Q
    ||||||||||||||||| ||||||||||||||||    
T  42428966 atcgtgacacgatttagtaagcgtgtcacgattt 42428933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 885
Target Start/End: Complemental strand, 33160882 - 33160809
Alignment:
Q  811 aatcgtgacacgatttagcaagcgtgtcacgatttcac-aatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    |||||||||||||||| ||||||||||||||||||    |||| ||||||| |||||| |||||||||||||||||    
T  33160882 aatcgtgacacgatttggcaagcgtgtcacgattttggtaatgtcaagagc-tgtttt-cagggtgtccaatcgtg 33160809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 832 - 885
Target Start/End: Original strand, 21272525 - 21272578
Alignment:
Q  832 gcgtgtcacgatttcacaatgccaagagcatgttttgcagggtgtccaatcgtg 885  Q
    ||||||||||||||  |||| |||| ||| ||||||| ||||||||||||||||    
T  21272525 gcgtgtcacgatttggcaataccaatagcttgttttgaagggtgtccaatcgtg 21272578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University