View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994R-Insertion-5 (Length: 865)
Name: NF2994R-Insertion-5
Description: NF2994R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994R-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 500
Target Start/End: Complemental strand, 46503685 - 46503193
Alignment:
| Q |
8 |
aaattgtgcacgagaaaaattattaattaaagtgacactaacgacaattttacaaatatgtcaaataagatttgaactcggtctcttgagacctcggaca |
107 |
Q |
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| T |
46503685 |
aaattgtgcacgagaaaaattattaattaaagtgacactaacgacaattttacaaatatgtcaaataagatttgaactcggtctcttgagacctcggaca |
46503586 |
T |
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| Q |
108 |
aataattaaatagtttgttacatataaaagaaagaaaaggtggtttgaaagtgtaccgtttgtgagaagttgcatgcagagaggaagctcacgtttgaaa |
207 |
Q |
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| T |
46503585 |
aataattaaatagtttgttacatataaaagaaagaaaaggtggtttgaaagtgtaccgtttgtgagaagttgcatgcagagaggaagctcacgtttgaaa |
46503486 |
T |
|
| Q |
208 |
gcatcgattttgagacgttcttcttctaagcgagaaacaaattcttcgagtttgtagctttgatcactttgttctccaaatgatttcagtaacatggagt |
307 |
Q |
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| T |
46503485 |
gcatcgattttgagacgttcttcttctaagcgagaaacaaattcttcgagtttgtagctttgatcactttgttctccaaatgatttcagtaacatggagt |
46503386 |
T |
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| Q |
308 |
agctatgtggcttgcaatccaagcctagttcagatgatgaagccattctttgttaaaaaactaaataataatcactgttttttaagatatagatatgttc |
407 |
Q |
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| T |
46503385 |
agctatgtggcttgcaatccaagcctagttcagatgatgaagccattctttgttaaaaaaataaattataagcactgttttttaagatatagatatgttc |
46503286 |
T |
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| Q |
408 |
atatgacaaaatagaaaagaaggtggtttgtatgtaggaagaaacaagagcaaaagagagtgtttggcttattgctttgtagttcttgtgggg |
500 |
Q |
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| T |
46503285 |
atatgacaaaatagaaaagaaggtggtttgtatgtaggaagaaacaagagcaaaagagagtgtttggcttattgctttgtagttcttgtgggg |
46503193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 527 - 865
Target Start/End: Complemental strand, 46503166 - 46502828
Alignment:
| Q |
527 |
tatataaaagggaaggtatgttggtttatgaactcaaggaggatcaagagaggatcatcttctttttagaggtgagtttagtgggaataaagttggtcta |
626 |
Q |
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| T |
46503166 |
tatataaaagggaaggtatgttggtttatgaactcaaggaggatcaagagaggatcatcttctttttagaggtgagtttagtgggaataaagttggttta |
46503067 |
T |
|
| Q |
627 |
tgtgagagaaagagacaaaagaaaaagtatgagataaagcagagagaattgtaacttccttacaaagaagtaagaaccaatggaaaacatagggctaaat |
726 |
Q |
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| T |
46503066 |
tgtgagagaaagagacaaaagaaaaagtatgagataaagcagagagaattgtaacttccttacaaagaagcaagaaccaatggaaaacatagggctaaat |
46502967 |
T |
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| Q |
727 |
agtctttttcatccttaaatgttaaat-agtacatacatatattaaaattacaaaatcatatgtaaatttgtctttgnnnnnnnnnaagtcatttgaatt |
825 |
Q |
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| T |
46502966 |
agtctttttcatccttaaatgttaaataagtacatacatatattaaaattacaaaatcatatgtaaatttgtctttg-ttttttttaagtcatttgaatt |
46502868 |
T |
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| Q |
826 |
ctcaagtcatgtgtttttagttagttagtttttgttatcc |
865 |
Q |
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| T |
46502867 |
ctcaagtcatgtgtttttagttggctagtttttgttatcc |
46502828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 1082590 - 1082627
Alignment:
| Q |
25 |
aattattaattaaagtgacactaacgacaattttacaa |
62 |
Q |
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| T |
1082590 |
aattattaattaaagtgacattaacgacaattttacaa |
1082627 |
T |
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