View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2994R-Insertion-7 (Length: 820)

Name: NF2994R-Insertion-7
Description: NF2994R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2994R-Insertion-7
NF2994R-Insertion-7
[»] chr2 (6 HSPs)
chr2 (32-820)||(31790154-31790937)
chr2 (348-432)||(11530027-11530111)
chr2 (329-397)||(27318007-27318075)
chr2 (361-416)||(26174939-26174994)
chr2 (351-401)||(3110522-3110572)
chr2 (356-402)||(36300410-36300456)
[»] chr6 (9 HSPs)
chr6 (329-418)||(14933135-14933224)
chr6 (367-474)||(31694720-31694827)
chr6 (330-437)||(2732929-2733036)
chr6 (370-425)||(14933026-14933081)
chr6 (329-432)||(1912466-1912569)
chr6 (351-415)||(9074118-9074182)
chr6 (351-415)||(29243074-29243138)
chr6 (353-412)||(1356890-1356949)
chr6 (361-416)||(9194424-9194479)
[»] chr8 (5 HSPs)
chr8 (329-477)||(21226878-21227026)
chr8 (378-483)||(8455082-8455187)
chr8 (351-430)||(39550942-39551021)
chr8 (329-430)||(30560088-30560190)
chr8 (340-430)||(27483051-27483141)
[»] chr5 (7 HSPs)
chr5 (351-477)||(40990910-40991036)
chr5 (329-424)||(10389927-10390022)
chr5 (336-429)||(22532557-22532650)
chr5 (351-430)||(7430118-7430197)
chr5 (329-429)||(22214911-22215011)
chr5 (364-402)||(4787940-4787978)
chr5 (338-387)||(5987328-5987377)
[»] chr3 (9 HSPs)
chr3 (342-476)||(43307668-43307800)
chr3 (351-416)||(24830151-24830216)
chr3 (337-430)||(2716475-2716567)
chr3 (370-426)||(53855745-53855801)
chr3 (370-430)||(54842197-54842257)
chr3 (370-437)||(21754231-21754298)
chr3 (335-454)||(54375380-54375499)
chr3 (340-477)||(38884047-38884185)
chr3 (342-415)||(43307600-43307673)
[»] chr1 (6 HSPs)
chr1 (351-436)||(24674092-24674177)
chr1 (351-430)||(6025952-6026031)
chr1 (351-430)||(7347693-7347772)
chr1 (390-452)||(4068015-4068077)
chr1 (375-436)||(50322035-50322096)
chr1 (329-386)||(52444961-52445018)
[»] chr4 (5 HSPs)
chr4 (389-477)||(30986284-30986372)
chr4 (351-416)||(34581593-34581658)
chr4 (375-415)||(2843587-2843627)
chr4 (325-396)||(39032516-39032587)
chr4 (361-410)||(47789183-47789232)
[»] chr7 (3 HSPs)
chr7 (329-430)||(28613204-28613305)
chr7 (375-414)||(25268834-25268873)
chr7 (363-416)||(30900106-30900159)


Alignment Details
Target: chr2 (Bit Score: 729; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 32 - 820
Target Start/End: Original strand, 31790154 - 31790937
Alignment:
Q  32 atataaatagtatcctatttcatttataagcctcactatttcatgtataagcctcattttgaaatttaaggcttggttgttttaaaaatatgtcgtgtta 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31790154 atataaatagtatcctatttcatttataagcctcactatttcatgtataagcctcattttgaaatttaaggcttggttgttttaaaaatatgttgtgtta 31790253  T
Q  132 tatattgtatgatggatatcttattaaagaactgttgggccgtttgatatcggagtggtccatgtttagagtcccacgttggctgagataatatctggat 231  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  31790254 tatattgtatgatggatatcttatcaaagaactgttgggccgtttgatatcggagcggtccatgtttagagtcccacattggctgagataatatctggat 31790353  T
Q  232 agagcttattagttgggcactccgcaccctacaagctggttttgtaaggtttatgttgaacaatgttgtcaattgcagataagataacgtttagttgaaa 331  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     |||||||||||||||    
T  31790354 agagcttattagttgggcactctgcaccctacaagctggttttgtaagggttatgttgaacaatgttgtcaattgcagat-----aacgtttagttgaaa 31790448  T
Q  332 ttctgctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaattt 431  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31790449 ttctgctatgcaatactgatatagcgccactatatccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaattt 31790548  T
Q  432 cactactctacagcggtatagtgtcgttatagctgctatttaacaatattggttaaaagcgcaatctcaactctaagaatttatattacaaaattagtac 531  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31790549 cactactctacagcggtatagtgtcgttatagctgctatttaacaatattggttaaaagcgcaatcccaactctaagaatttatattacaaaattagtac 31790648  T
Q  532 ttaattttcagtttatttcctattttcaaatatatgtacagaaactagtgaaaagattttgttctcacattttcttatagaagttcatgaaaagaagaaa 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31790649 ttaattttcagtttatttcctattttcaaatatatgtacagaaactagtgaaaagattttgttctcacattttcttatagaagttcatgaaaagaagaaa 31790748  T
Q  632 cagagtggaaataaggtgacattattgtaattaccagtgaaaacaaaaacatttcttcaaatcaaacatgcttcgtttttgcattttcattttaaacaat 731  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31790749 cagagtggaaataaggtgacattattgtaattaccagtgaaaacaaaaacatttcttcaaatcaaacatgcttcgtttttgcattttcatcttaaacaat 31790848  T
Q  732 catactctttcgatgtttagtgcatatagtcatatactgctacatgatgcagataagttgcatgtatcttaacatgtagtaaagttgcc 820  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31790849 catactctttcgatgtttagtgcatatagtcatatactgctacgtgatgcagataagttgcatgtatcttaacatgtagtaaagttgcc 31790937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 11530111 - 11530027
Alignment:
Q  348 tgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatttc 432  Q
    |||||||| |||||||||||| |||| | |||| ||| | ||||||||||||||| ||||||||||||   ||||| ||||||||    
T  11530111 tgatatagtgccactatagccgctatttcacaatattatgtactaaatagtgtatcgcagaacaatagtgatttgttcaaatttc 11530027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 27318075 - 27318007
Alignment:
Q  329 aaattctgctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatag 397  Q
    |||||| |||| |||||| | ||||||||||||||||||| |||| ||||| |||||| ||||||||||    
T  27318075 aaattccgctaggcaatagttatatagcgccactatagccgctatttgacagcattttttactaaatag 27318007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 26174994 - 26174939
Alignment:
Q  361 ctatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagc 416  Q
    |||||||  |||| ||||||||| |||||||||||||||||| |||||||||||||    
T  26174994 ctatagctgctatttgacaacatattatactaaatagtgtatcgcagaacaatagc 26174939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 3110522 - 3110572
Alignment:
Q  351 tatagcgccactatagccactatatgacaacattttatactaaatagtgta 401  Q
    ||||||||| ||||||||||||| |||||||  ||| ||||||||||||||    
T  3110522 tatagcgccgctatagccactatttgacaacgctttgtactaaatagtgta 3110572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 36300456 - 36300410
Alignment:
Q  356 cgccactatagccactatatgacaacattttatactaaatagtgtat 402  Q
    |||||||||| ||||||| |||||||||||| |||||||||| ||||    
T  36300456 cgccactatatccactatttgacaacattttgtactaaatagcgtat 36300410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 329 - 418
Target Start/End: Complemental strand, 14933224 - 14933135
Alignment:
Q  329 aaattctgctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctg 418  Q
    ||||||||| |||||||| || ||||||||||||||| || |||| |||||||| ||| ||||||| ||||||| |||||||||||||||    
T  14933224 aaattctgcaatgcaatagtgttatagcgccactatatccgctatctgacaacaatttgtactaaagagtgtatcgcagaacaatagctg 14933135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 31694720 - 31694827
Alignment:
Q  367 ccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatttcactactctacagcggtatagtgtcgttatagctg 466  Q
    ||||||| ||| |||||||| |||||||||||||||  |||||||||||| ||||||| ||||| |||||| | | |||  ||||||| || ||||||||    
T  31694720 ccactatttgaaaacattttgtactaaatagtgtatcacagaacaatagcagtttgtctaaattccactacgccatagcaatatagtgccgctatagctg 31694819  T
Q  467 ctatttaa 474  Q
    ||||||||    
T  31694820 ctatttaa 31694827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 330 - 437
Target Start/End: Complemental strand, 2733036 - 2732929
Alignment:
Q  330 aattctgctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaat 429  Q
    ||||| ||||| ||||| |  ||||||||| |||||||  |||| |||||||||||| ||||||||||  ||| ||| |||||||||  ||||| |||||    
T  2733036 aattccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 2732937  T
Q  430 ttcactac 437  Q
    ||||||||    
T  2732936 ttcactac 2732929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 370 - 425
Target Start/End: Original strand, 14933026 - 14933081
Alignment:
Q  370 ctatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtcc 425  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  14933026 ctatctgacaacattttgtactaaatagtgtattgcagaacaatagcggtttgtcc 14933081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 1912466 - 1912569
Alignment:
Q  329 aaattctgctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaa 428  Q
    |||||| |||||||||   || ||||||| |||||||| | |||| |||||| | ||| ||||||||||| ||| |||||||||||||  ||||| ||||    
T  1912466 aaattccgctatgcaacggtgctatagcgtcactatagtcgctatttgacaataatttgtactaaatagtatatcgcagaacaatagcgatttgttcaaa 1912565  T
Q  429 tttc 432  Q
    ||||    
T  1912566 tttc 1912569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 9074118 - 9074182
Alignment:
Q  351 tatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatag 415  Q
    ||||||||| |||||||| |||| ||| |||||||| || |||||||||||| ||| ||||||||    
T  9074118 tatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 9074182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 29243074 - 29243138
Alignment:
Q  351 tatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatag 415  Q
    |||||||||||||||||| | || |||| | |||||||| ||||||||||||  |||||||||||    
T  29243074 tatagcgccactatagccgcaatttgactagattttatattaaatagtgtatcccagaacaatag 29243138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 1356890 - 1356949
Alignment:
Q  353 tagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaa 412  Q
    |||||||||||||| |||||| | |||||||||| ||||||| || |||| |||||||||    
T  1356890 tagcgccactatagtcactatttaacaacattttgtactaaacagcgtatcgcagaacaa 1356949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 9194424 - 9194479
Alignment:
Q  361 ctatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagc 416  Q
    ||||| ||||||| |||||||||||| |||||||||  |||| |||||||||||||    
T  9194424 ctataaccactatttgacaacattttgtactaaataccgtatagcagaacaatagc 9194479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 329 - 477
Target Start/End: Complemental strand, 21227026 - 21226878
Alignment:
Q  329 aaattctgctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaa 428  Q
    |||||||||| ||||| | ||||||||||| ||||||||  |||| |||||||||||| |||| ||||| ||||||  ||||||||||| ||||| ||||    
T  21227026 aaattctgctttgcaacagtgatatagcgctactatagcagctatttgacaacattttgtactgaatagcgtatggaggaacaatagctttttgttcaaa 21226927  T
Q  429 tttcactactctacagcggtatagtgtcgttatagctgctatttaacaa 477  Q
    || | |||  ||| ||||||||||   || ||||||| |||||| ||||    
T  21226926 ttccgctatgctatagcggtatagcaccgctatagcttctatttgacaa 21226878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 378 - 483
Target Start/End: Complemental strand, 8455187 - 8455082
Alignment:
Q  378 caacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatttcactactctacagcggtatagtgtcgttatagctgctatttaacaa 477  Q
    ||||||||| ||||||||||||||  |  ||| ||||||||||| |||||||| |||||| ||| | ||||||||||||  |||||||||||  ||||||    
T  8455187 caacattttgtactaaatagtgtactgtggaataatagctgtttttccaaattccactacgctataacggtatagtgtcactatagctgctaagtaacaa 8455088  T
Q  478 tattgg 483  Q
     |||||    
T  8455087 cattgg 8455082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 39551021 - 39550942
Alignment:
Q  351 tatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatt 430  Q
    ||||| |||||||||||| |||| |||||||| || ||||| ||||||||||  || ||||||||| ||||||| |||||    
T  39551021 tatagtgccactatagccgctatttgacaacacttcatactcaatagtgtatcacaaaacaatagcggtttgtctaaatt 39550942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 329 - 430
Target Start/End: Complemental strand, 30560190 - 30560088
Alignment:
Q  329 aaattctgctatgcaatactgatatagcgccactatagccactatatgacaacattttat-actaaatagtgtatggcagaacaatagctgtttgtccaa 427  Q
    ||||| |||| | ||||| || ||||| |||||||||||  | || |||||||||||| | |||||||||||||| ||| ||||||||  ||||||||||    
T  30560190 aaattatgctgtacaatagtgctatagtgccactatagctgcaatttgacaacatttttttactaaatagtgtatcgcaaaacaatagtggtttgtccaa 30560091  T
Q  428 att 430  Q
    |||    
T  30560090 att 30560088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 340 - 430
Target Start/End: Complemental strand, 27483141 - 27483051
Alignment:
Q  340 tgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatt 430  Q
    ||||||| || ||||| |||||||||||| |||| |||||| ||||| ||||  |||| ||||  ||||| |||||| |||||| ||||||    
T  27483141 tgcaatagtgctatagtgccactatagccgctatttgacaatattttgtactggatagcgtatctcagaataatagcggtttgttcaaatt 27483051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 351 - 477
Target Start/End: Complemental strand, 40991036 - 40990910
Alignment:
Q  351 tatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatttcactactctacagcggtat 450  Q
    |||||| |||||||| ||||||| |||||||||||| |||||||||| || |  ||||| |||||| ||||||| ||||| ||||||  |  |||| |||    
T  40991036 tatagcaccactatacccactatttgacaacattttgtactaaatagcgtgtcacagaagaatagcggtttgtctaaattccactacgatttagcgatat 40990937  T
Q  451 agtgtcgttatagctgctatttaacaa 477  Q
    || | || |||||||||||||||||||    
T  40990936 agcgccgctatagctgctatttaacaa 40990910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 329 - 424
Target Start/End: Original strand, 10389927 - 10390022
Alignment:
Q  329 aaattctgctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtc 424  Q
    ||||||||||||| |||| || ||||| | ||||||||||  ||  |||||||||||| || |||||||||||| ||| ||||||||| |||||||    
T  10389927 aaattctgctatgtaatagtgctatagggtcactatagccgatacttgacaacattttgtaataaatagtgtatcgcataacaatagcagtttgtc 10390022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 336 - 429
Target Start/End: Complemental strand, 22532650 - 22532557
Alignment:
Q  336 gctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaat 429  Q
    ||||||||||| || ||||| ||||||||| || ||||  ||||| ||||| |||| ||||||||||  | |||||||||| ||||||||||||    
T  22532650 gctatgcaatagtgctatagtgccactataacctctattcgacaatattttgtacttaatagtgtatctcggaacaatagcagtttgtccaaat 22532557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 7430197 - 7430118
Alignment:
Q  351 tatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatt 430  Q
    |||||||| || |||||| |||| ||||||||| || |||||||||| |||| |  |||||||||| |||||||||||||    
T  7430197 tatagcgctacaatagccgctatttgacaacatcttgtactaaatagcgtattgtggaacaatagcggtttgtccaaatt 7430118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 329 - 429
Target Start/End: Complemental strand, 22215011 - 22214911
Alignment:
Q  329 aaattctgctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaa 428  Q
    |||||| |||| |||||| || |||| | | ||||| ||  |||| |||||||||||| |||| |||||||||| ||||||||||||| | ||||| |||    
T  22215011 aaattccgctacgcaatagtgctataactctactattgcagctatttgacaacattttgtactgaatagtgtattgcagaacaatagcagcttgtctaaa 22214912  T
Q  429 t 429  Q
    |    
T  22214911 t 22214911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 4787978 - 4787940
Alignment:
Q  364 tagccactatatgacaacattttatactaaatagtgtat 402  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  4787978 tagccactatttgacaacattttgtactaaatagtgtat 4787940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 5987377 - 5987328
Alignment:
Q  338 tatgcaatactgatatagcgccactatagccactatatgacaacatttta 387  Q
    ||||||||| || ||||||||| ||||||||||||  |||||||||||||    
T  5987377 tatgcaatagtgctatagcgccgctatagccactacttgacaacatttta 5987328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 342 - 476
Target Start/End: Original strand, 43307668 - 43307800
Alignment:
Q  342 caatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatttcactactcta 441  Q
    ||||| || ||||||||||||||| || |||| |||||||||||| || ||||||||||    || |||||||||||| | |||||||| | |||| |||    
T  43307668 caatagtgctatagcgccactataaccgctatctgacaacattttctattaaatagtgtca--caaaacaatagctgtgtatccaaattccgctacacta 43307765  T
Q  442 cagcggtatagtgtcgttatagctgctatttaaca 476  Q
     || |||||||||  | ||||||||||||||||||    
T  43307766 tagtggtatagtgctgctatagctgctatttaaca 43307800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 24830216 - 24830151
Alignment:
Q  351 tatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagc 416  Q
    |||||||||  |||||||  ||| |||||||||||||||||||||||||||| | |||||||||||    
T  24830216 tatagcgccgatatagcctttatttgacaacattttatactaaatagtgtattgtagaacaatagc 24830151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 2716567 - 2716475
Alignment:
Q  337 ctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatt 430  Q
    |||||||| | || |||||||||||||||||| || | | |||||  |||||||||||||| |||| || |||||||| ||||||||| |||||    
T  2716567 ctatgcaacagtgctatagcgccactatagcctctgttt-acaaccatttatactaaatagcgtatcgcggaacaataactgtttgtctaaatt 2716475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 53855745 - 53855801
Alignment:
Q  370 ctatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtcca 426  Q
    |||| |||||||||||| ||||||||||  ||| ||||||||||||| |||||||||    
T  53855745 ctatttgacaacattttgtactaaatagcatattgcagaacaatagcagtttgtcca 53855801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 54842197 - 54842257
Alignment:
Q  370 ctatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatt 430  Q
    |||| ||||||||||||||||||||||| ||||  |||||||||||| |||| || |||||    
T  54842197 ctatttgacaacattttatactaaatagcgtatcacagaacaatagcggtttctctaaatt 54842257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 21754298 - 21754231
Alignment:
Q  370 ctatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatttcactac 437  Q
    |||| |||||||| ||| ||||||||||||||| || ||||||||||  |||||| ||||||| ||||    
T  21754298 ctatttgacaacaatttgtactaaatagtgtatcgcggaacaatagcgatttgtctaaatttcgctac 21754231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 454
Target Start/End: Complemental strand, 54375499 - 54375380
Alignment:
Q  335 tgctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatttcac 434  Q
    |||||||| ||| || |||| |||||||||||   |||| ||| |||||||| ||||||||||  ||| |  |||||||||| ||||||||||||  | |    
T  54375499 tgctatgcgatagtgctatatcgccactatagaggctatttgataacattttgtactaaatagcttattggggaacaatagcagtttgtccaaataccgc 54375400  T
Q  435 tactctacagcggtatagtg 454  Q
    ||  ||| ||||||||||||    
T  54375399 tatgctatagcggtatagtg 54375380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 38884047 - 38884185
Alignment:
Q  340 tgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtcc-aaatttcactact 438  Q
    ||||||| || |||||| |||||||| ||||||| |||||| ||||| ||| ||||||  ||| |  ||||||| || |||||||| ||||| ||||||     
T  38884047 tgcaatagtgctatagcaccactatacccactatttgacaatattttgtaccaaatagcatattgtggaacaatggcggtttgtccaaaattccactacc 38884146  T
Q  439 ctacagcggtatagtgtcgttatagctgctatttaacaa 477  Q
     |  || ||||||| | || || ||||||||||||||||    
T  38884147 ttgtagtggtatagggccgctacagctgctatttaacaa 38884185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 43307600 - 43307673
Alignment:
Q  342 caatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatag 415  Q
    ||||| || ||||||||||||||| ||||||| | |||||||||| ||||||| || ||||  || ||||||||    
T  43307600 caatagtgctatagcgccactataaccactatctaacaacattttgtactaaacagcgtatcacaaaacaatag 43307673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 436
Target Start/End: Complemental strand, 24674177 - 24674092
Alignment:
Q  351 tatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatttcacta 436  Q
    |||| ||| |||||||||| ||| ||| |||||||||||||||||||||||| ||   |||| ||||||||||||||||| |||||    
T  24674177 tataacgctactatagccattatttgataacattttatactaaatagtgtattgcgtcacaacagctgtttgtccaaattccacta 24674092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 6025952 - 6026031
Alignment:
Q  351 tatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatt 430  Q
    ||||||||  ||||||||||||| |||||||||||| ||||||||||  ||| || |||||||| || ||||| ||||||    
T  6025952 tatagcgctgctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaatt 6026031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 7347772 - 7347693
Alignment:
Q  351 tatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatt 430  Q
    ||||||||| |||||||| |||| | |||| ||||| ||||||||||||||| ||| |||||||||  ||||| ||||||    
T  7347772 tatagcgcctctatagccgctatttcacaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaatt 7347693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 452
Target Start/End: Complemental strand, 4068077 - 4068015
Alignment:
Q  390 ctaaatagtgtatggcagaacaatagctgtttgtccaaatttcactactctacagcggtatag 452  Q
    |||||||||||||||  |||||||||  ||||||||||||| |||||| ||||| || |||||    
T  4068077 ctaaatagtgtatggtggaacaatagaagtttgtccaaattccactacactacaccgctatag 4068015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 50322096 - 50322035
Alignment:
Q  375 tgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaatttcacta 436  Q
    |||||| |||||||||||||| |||||| | ||||||||||  |||||| |||||| |||||    
T  50322096 tgacaatattttatactaaattgtgtatcgtagaacaatagtggtttgttcaaattccacta 50322035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 386
Target Start/End: Original strand, 52444961 - 52445018
Alignment:
Q  329 aaattctgctatgcaatactgatatagcgccactatagccactatatgacaacatttt 386  Q
    |||||||||||||||||  || |||||||| ||||||||  |||| ||||||||||||    
T  52444961 aaattctgctatgcaatggtgctatagcgctactatagcagctatttgacaacatttt 52445018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 30986372 - 30986284
Alignment:
Q  389 actaaatagtgtatggcagaacaatagctgtttgtccaaatttcactactctacagcggtatagtgtcgttatagctgctatttaacaa 477  Q
    ||||||||| |||| | ||||||||||| ||||||||||||| | |||| ||| |||||||||| | |  |||||||||| ||||||||    
T  30986372 actaaatagcgtattgaagaacaatagcggtttgtccaaattcctctacactatagcggtatagcgccactatagctgctttttaacaa 30986284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 34581658 - 34581593
Alignment:
Q  351 tatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagc 416  Q
    |||||||| ||||||||| |||| |||||||||||| |||||||||| ||||  | ||||||||||    
T  34581658 tatagcgctactatagccgctatttgacaacattttgtactaaatagcgtatcacggaacaatagc 34581593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 2843587 - 2843627
Alignment:
Q  375 tgacaacattttatactaaatagtgtatggcagaacaatag 415  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  2843587 tgacaacattttgtactaaatagtgtatcgcagaacaatag 2843627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 396
Target Start/End: Original strand, 39032516 - 39032587
Alignment:
Q  325 gttgaaattctgctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaata 396  Q
    ||||||||||||||| |||||| || ||||||||| || |||||| |||  ||||||||||| ||| |||||    
T  39032516 gttgaaattctgctacgcaatagtgctatagcgcccctgtagccattattcgacaacattttgtaccaaata 39032587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 47789232 - 47789183
Alignment:
Q  361 ctatagccactatatgacaacattttatactaaatagtgtatggcagaac 410  Q
    ||||||||||||| |||||||| ||| |||||||||| |||| |||||||    
T  47789232 ctatagccactatttgacaacagtttgtactaaatagagtattgcagaac 47789183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 329 - 430
Target Start/End: Original strand, 28613204 - 28613305
Alignment:
Q  329 aaattctgctatgcaatactgatatagcgccactatagccactatatgacaacattttatactaaatagtgtatggcagaacaatagctgtttgtccaaa 428  Q
    |||||| ||||||||| | || |||||| |||||  | | | ||| |||||||||||| ||||| ||||||||| |  |||||||||| |||||||||||    
T  28613204 aaattccgctatgcaacagtgctatagcaccactcgaacaattatttgacaacattttgtactatatagtgtatcgtggaacaatagccgtttgtccaaa 28613303  T
Q  429 tt 430  Q
    ||    
T  28613304 tt 28613305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 25268873 - 25268834
Alignment:
Q  375 tgacaacattttatactaaatagtgtatggcagaacaata 414  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  25268873 tgacaatattttatactaaatagtgtatagcagaacaata 25268834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 30900106 - 30900159
Alignment:
Q  363 atagccactatatgacaacattttatactaaatagtgtatggcagaacaatagc 416  Q
    ||||||||||| | |||| ||||| ||||||||||||||| || ||||||||||    
T  30900106 atagccactatttcacaatattttgtactaaatagtgtatcgctgaacaatagc 30900159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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