View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994R-Insertion-8 (Length: 708)
Name: NF2994R-Insertion-8
Description: NF2994R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994R-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 9 - 708
Target Start/End: Original strand, 43639541 - 43640240
Alignment:
| Q |
9 |
tcaacattaggcctaatcccaccccaatacccacaaaaagcatgccacacataaacctcctttaataaacccctaaattcctcctttaaatccctcacaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43639541 |
tcaacattaggcctaatcccaccccaatacccacaaaaagcatgccacacataaacctcctttaataaacccctaaattcctcctttaaatccctcacaa |
43639640 |
T |
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| Q |
109 |
acccacccatacctaaagattcatcatattccttaaattttttattttcttcaaaacttattaaccttcccaacatttgttcaccaggtatagaacaatt |
208 |
Q |
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| T |
43639641 |
acccacccatacctaaagattcatcatattccttaaattttttattttcttcaaaacttattaaccttcccaacatttgttcgccaggtatagaacaatt |
43639740 |
T |
|
| Q |
209 |
caaacttaaacaatcaccaccgttcaaaaaatcttcatcatcacgacaaaaattttgccaaccatcatcaatgattacaaaacttggaggacacccacct |
308 |
Q |
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| T |
43639741 |
caaacttaaacaatcaccaccgttcaaaaaatcttcatcatcacgacaaaaattttgccaaccatcatcaatgattacaaaacttggaggacacccacct |
43639840 |
T |
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| Q |
309 |
tctactaaacccttaacaccttctttcactccttgagggtctaccttaaggtaaaatgcatcccatgtacaccatccaaatttatcaactatatcaggta |
408 |
Q |
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| T |
43639841 |
tctactaaacccttaacaccttctttcactccttgagggtccaccttaaggtaaaatgcatcccatgtacaccatccaaatttatcaactatatcaggta |
43639940 |
T |
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| Q |
409 |
ttgttttttcttctagaagtttgaatgttccaaggtggtctctaacaaccttaatcgcttcgttcattaatatataaggatcgaagtttgcatgaatgta |
508 |
Q |
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| T |
43639941 |
ttgttttttcttctagaagtttgaatgttccaaggtggtctctaacaaccttaatcgcttcgttcattaatatataaggatcgaagtttgcatgaatgta |
43640040 |
T |
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| Q |
509 |
taaacatgttttgaaagttgattcaacaacacgtgtggatccactttccatgcaaatgtccacgttgttattgttttctcctggttgaagacaagctctg |
608 |
Q |
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| T |
43640041 |
taaacatgttttgaaagttgattcaacaacacgtgtggatccactttccatgcaaatgtccacgttgttattgttttctcctggttgaagacaagctctg |
43640140 |
T |
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| Q |
609 |
aaagaaccttcgatgagtggtaaaagaagaacgtagggacgttgtttaacggtgtcgttttcaagtataatcatttgagtttcgttttctatgtcattgc |
708 |
Q |
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| T |
43640141 |
aaagaaccttcgatgagtggtaaaagaagaacgtagggacgttgtttaacggtgtcgttttcaagtataatcatttgagtttcgttttctatgtcattgc |
43640240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 263 - 427
Target Start/End: Complemental strand, 486576 - 486412
Alignment:
| Q |
263 |
ttgccaaccatcatcaatgattacaaaacttggaggacacccaccttctactaaacccttaacaccttctttcactccttgagggtctaccttaaggtaa |
362 |
Q |
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| T |
486576 |
ttgccaaccatcatcaatcaagacaaagccaggtggacaaccaccatcagataaatccttaacaccttcccaaactccttgagggtgtaccttaagataa |
486477 |
T |
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| Q |
363 |
aatgcatcccatgtacaccatccaaatttatcaactatatcaggtattgttttttcttctagaag |
427 |
Q |
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| T |
486476 |
aatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaag |
486412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 486818 - 486766
Alignment:
| Q |
9 |
tcaacattaggcctaatcccaccccaatacccacaaaaagcatgccacacata |
61 |
Q |
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| T |
486818 |
tcaacattaggtcttatcccaccccaataaccacataaagcatgccacacata |
486766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 36432407 - 36432444
Alignment:
| Q |
360 |
taaaatgcatcccatgtacaccatccaaatttatcaac |
397 |
Q |
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| T |
36432407 |
taaaaagcatcccatgtacaccaaccaaatttatcaac |
36432444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 34698214 - 34698263
Alignment:
| Q |
15 |
ttaggcctaatcccaccccaatacccacaaaaagcatgccacacataaac |
64 |
Q |
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| T |
34698214 |
ttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaac |
34698263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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