View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994R-Insertion-9 (Length: 632)
Name: NF2994R-Insertion-9
Description: NF2994R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994R-Insertion-9 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 10 - 632
Target Start/End: Complemental strand, 5075701 - 5075079
Alignment:
| Q |
10 |
agcaaacccctctatggactgctcaaacaaagggaatgttggcatatggagaattagaacctcaaacctaaagaggagcaaacacctagatctcaagctt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5075701 |
agcaaacccctctatggactgctcaaacaaagggaatgttggcatatggagaattagaacctcaaacctaaagaggagcaaacacctaggtctcaagctt |
5075602 |
T |
|
| Q |
110 |
acaccaccaggtcaacccaacccatgcgggttacaaaccctaaatacttaattttgattcataatcccattaaatgcatcattagccctgacagtacaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5075601 |
acaccaccaggtcaacccaacccatgcgggttacaaaccctaaatacttaattttgattcataatcccattaaatgcatcattagccctgacagtacaaa |
5075502 |
T |
|
| Q |
210 |
attcacaccgccattcaatacactcaccaacagagacctatgaagcgctaacatacaccagatataacaatacactgacacctggacacaaacaatcctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5075501 |
attcacaccgccattcaatacactcaccaacagagacctatgaagcactaacatacaccagatataacaatacactgacacctcgacacaaacaatcctt |
5075402 |
T |
|
| Q |
310 |
tgaaagaatggcataattgaatgtaatcacatgtgtcaaatacaagcttctat-agaagtgtcgatgctacatagatagaaacacaaataatttaaaatt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
5075401 |
tgaaagaatggcataattgaatgtaatcacatgtgtcaaatacacgcttctatcagaagtgtcgatgctacatagatagaaacacaaataa-ttcaaatt |
5075303 |
T |
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| Q |
409 |
taaacaaaaccccttgcaatttaaaatgaacaaatcaattttttcatccaatttacctatagatacacccaaacgcaagattatcacgatcaccatgaga |
508 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5075302 |
taaacaaaaccacttgcaatttaaaatgaacaaatcaattttttcatccaatttacctatagatacacccaaacgcaagattatcacgatcaccatgaga |
5075203 |
T |
|
| Q |
509 |
atcaatgaaataatctttaactgtattagcctcagaatcagcccaggcccgaacacgcgatttcctcgaaccaaatccacttttctcatcagacctatca |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5075202 |
atcaatgaaataatctttaactgtattagcctcagaatcagcccaggcccgaacacgcgatttcctcgaaccaaatccacttttctcatcagacctatca |
5075103 |
T |
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| Q |
609 |
cgcttccgcttcttcttcttcctc |
632 |
Q |
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| T |
5075102 |
cgcttccgcttcttcttcttcctc |
5075079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 43093570 - 43093534
Alignment:
| Q |
308 |
tttgaaagaatggcataattgaatgtaatcacatgtg |
344 |
Q |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
43093570 |
tttgaaaaaatggcataattgaatgtaatcacatgtg |
43093534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 344
Target Start/End: Complemental strand, 31901314 - 31901286
Alignment:
| Q |
316 |
aatggcataattgaatgtaatcacatgtg |
344 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31901314 |
aatggcataattgaatgtaatcacatgtg |
31901286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 350
Target Start/End: Complemental strand, 51384019 - 51383991
Alignment:
| Q |
322 |
ataattgaatgtaatcacatgtgtcaaat |
350 |
Q |
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| T |
51384019 |
ataattgaatgtaatcacatgtgtcaaat |
51383991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 27583930 - 27584000
Alignment:
| Q |
142 |
acaaaccctaaatacttaattttgattcataatcccattaaatgcatcattagccctgacagtacaaaatt |
212 |
Q |
| |
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|||||||||||||| |||||| |||||| ||| ||||||||||||| ||||| |||||||| || ||||| |
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| T |
27583930 |
acaaaccctaaatagttaattaagattcaaaattccattaaatgcatgattaggcctgacagcaccaaatt |
27584000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 27253299 - 27253338
Alignment:
| Q |
308 |
tttgaaagaatggcataattgaatgtaatcacatgtgtca |
347 |
Q |
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||||||| |||| ||||||||||||||||||||||||||| |
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| T |
27253299 |
tttgaaaaaatgtcataattgaatgtaatcacatgtgtca |
27253338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 12668013 - 12667976
Alignment:
| Q |
308 |
tttgaaagaatggcataattgaatgtaatcacatgtgt |
345 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||| |
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| T |
12668013 |
tttgaaaaaatggtataattgaatgtaatcacatgtgt |
12667976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 46550837 - 46550797
Alignment:
| Q |
307 |
ctttgaaagaatggcataattgaatgtaatcacatgtgtca |
347 |
Q |
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|||||||| |||| ||||||||| ||||||||||||||||| |
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| T |
46550837 |
ctttgaaaaaatgacataattgagtgtaatcacatgtgtca |
46550797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 1586622 - 1586662
Alignment:
| Q |
308 |
tttgaaagaatggcataattgaatgtaatcacatgtgtcaa |
348 |
Q |
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||||||| |||| |||||||||| ||||||||||||||||| |
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| T |
1586622 |
tttgaaaaaatgacataattgaacgtaatcacatgtgtcaa |
1586662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 37967906 - 37967874
Alignment:
| Q |
316 |
aatggcataattgaatgtaatcacatgtgtcaa |
348 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
37967906 |
aatggcataattgagtgtaatcacatgtgtcaa |
37967874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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