View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2995_high_11 (Length: 281)
Name: NF2995_high_11
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2995_high_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 17775787 - 17775525
Alignment:
| Q |
17 |
agaactgagatctgaaatttgatttaatttcaatgttttttatatctcttggctgctggtggtattggactattgttcatcataggtttgannnnnnnaa |
116 |
Q |
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| T |
17775787 |
agaactgagatctgaaatttgatttaatttcaatatttc--atatctcttggctgctggtggtattggactattgttcatcataggtttgatttttttaa |
17775690 |
T |
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| Q |
117 |
gaaaaagtataccaagtgggttgtggtgtcacgttcatatagcttttgtttttcttgtatatactagttagtatatatgtatgaatgaatcattacaagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
17775689 |
gaaaaagtataccaagtgggttgtggtgtcacgttcatatagcttttgtttttcttgtatatactaattagtatatatgtatgtatgaatcattacaagg |
17775590 |
T |
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| Q |
217 |
atgaatgaatgttttcttattnnnnnnntgtggaagacattattgcagagtagcgtgcatacatt |
281 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17775589 |
atgaatgaatgttttcttattaaaaaaatgtggaagacattattgcagagtagcgtgcatacatt |
17775525 |
T |
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