View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2995_high_17 (Length: 239)
Name: NF2995_high_17
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2995_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 42310073 - 42309855
Alignment:
| Q |
2 |
aaaaatatttttactttgtaaaattgatcgacaaaattactaacaagggatatatttgaagatgtgttagtaactttgttaatttcagatattttagtga |
101 |
Q |
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| T |
42310073 |
aaaaatatttttactttgtaaaattgatc-acaaaattactaacaagggatatatttgaagatgtgttagtaactttgttaaattcagatattttagtga |
42309975 |
T |
|
| Q |
102 |
caatacttcacacagttagagactaaaataattatttactatatctttaaaactctatatgtagtaataattgaaagagatatatactgcctccactaat |
201 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309974 |
caatacttcacacagttggagactaaaataattatttactatatctttaaaactctatatgtagtaataattgaaagagatatatactgcctccactaat |
42309875 |
T |
|
| Q |
202 |
caaattttctgcatccgtcc |
221 |
Q |
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|||||||||||||||||||| |
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| T |
42309874 |
caaattttctgcatccgtcc |
42309855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 29056957 - 29057066
Alignment:
| Q |
6 |
atatttttactttgtaaaattgatcgacaaaattactaacaagggatatatttgaagatgtgttagtaactttgttaatttcagatattttagtgacaat |
105 |
Q |
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| T |
29056957 |
atatttttacttagtaaaattaatcgacaaaattactaacaatggatatatttgaagatgtgttagtaacttttttaaacttagatattataatgacaat |
29057056 |
T |
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| Q |
106 |
acttcacaca |
115 |
Q |
| |
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| |||||||| |
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| T |
29057057 |
atttcacaca |
29057066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 30205814 - 30205853
Alignment:
| Q |
38 |
ttactaacaagggatatatttgaagatgtgttagtaactt |
77 |
Q |
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| T |
30205814 |
ttactaacaagggatatatttgaagacatgttagtaactt |
30205853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 41943207 - 41943296
Alignment:
| Q |
16 |
tttgtaaaattgatcgacaaaattactaacaagggatatatttgaagatgtgttagtaactttgttaatttcagatattttagtgacaat |
105 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
41943207 |
tttgtaaaattgatcgacaaatttactaacaagggatatatttgaagatgtgttagtaactttgttaaattcagatgttatagtgacaat |
41943296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 26021735 - 26021604
Alignment:
| Q |
34 |
aaaattactaacaagggatatatttgaagatgtgttagtaactttgttaatttcagatattttagtgacaa-tacttcacacagttagagactaaaataa |
132 |
Q |
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||||||| |||||| | |||||||||| |||||||| ||||||||| ||| ||| ||||| ||||| ||| |||||| | | |||||||| ||||||| |
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| T |
26021735 |
aaaattattaacaaagaatatatttgaggatgtgtttgtaactttgataaattctaatattatagtggcaaatacttcctagatttagagaccaaaataa |
26021636 |
T |
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| Q |
133 |
ttatttactatatctttaaaactctatatgta |
164 |
Q |
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||||||||||| | |||| ||||||| ||||| |
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| T |
26021635 |
ttatttactatttttttagaactctacatgta |
26021604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 27738365 - 27738426
Alignment:
| Q |
155 |
tctatatgtagtaataattgaaagagatatatactgcctccactaatcaaattttctgcatc |
216 |
Q |
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|||| |||||||||||||||||||||||||| | || || ||||| | ||| |||||||||| |
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| T |
27738365 |
tctacatgtagtaataattgaaagagatatacaatgacttcactatttaaagtttctgcatc |
27738426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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