View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2995_high_8 (Length: 351)
Name: NF2995_high_8
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2995_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 27839565 - 27839855
Alignment:
| Q |
18 |
agatgaagaaagatacgtagagcatgtagatcaggcagatgaatccacctacaagaaagcaggtgttgggacactaaataatggaagattgggtcgcaat |
117 |
Q |
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| T |
27839565 |
agatgaagaaagatacgtagagcatgtagaa---gcagatgaatccacctacaagaaagcaggtgttgggacactaaataatggaagattgggtcgcaat |
27839661 |
T |
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| Q |
118 |
tcggccaacaattggatcctcatatgatccactcaaataaccccacaagtagaacaaagaaaatcag---agtgaaaacccaaaagggatt------gga |
208 |
Q |
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| T |
27839662 |
tcggccaacaattggatcctcatatgatccactcaaataaccccacaagtagaacaaataacatcagactagtgaagacccaaaagggattggatgcgga |
27839761 |
T |
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| Q |
209 |
tgctaccccatgcttgcttcaaatattcttttttagtgtagaccatatcaaaactttatcttgcataatatacagaaagtccttttaatttctt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27839762 |
tgctaccccatgcttgcttcaaatattcttttttagtgtagaccatatcaaaactttatcttgcataatatacagaaagtccttttaatttctt |
27839855 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 51164182 - 51164084
Alignment:
| Q |
170 |
aacaaagaaaatcaga---gtgaaaacccaaaagggattggatgctaccccatgcttgcttcaaatattcttttttagtgtagaccatatcaaaacttt |
265 |
Q |
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|||||||||||||||| ||||| ||| ||||||||||||||||| ||| | ||||||||||||| || ||||||||||| ||||||||||||||||| |
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| T |
51164182 |
aacaaagaaaatcagactagtgaagacctaaaagggattggatgctgccctaagcttgcttcaaatgtttttttttagtgtggaccatatcaaaacttt |
51164084 |
T |
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