View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2995_low_1 (Length: 736)
Name: NF2995_low_1
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2995_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 693; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 15 - 719
Target Start/End: Complemental strand, 43640245 - 43639541
Alignment:
| Q |
15 |
caaaggcaatgacatagaaaacgaaactcaaatgattatacttgaaaacgacaccgttaaacaacgtccctacgttcttcttttaccactcatcgaaggt |
114 |
Q |
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| T |
43640245 |
caaaggcaatgacatagaaaacgaaactcaaatgattatacttgaaaacgacaccgttaaacaacgtccctacgttcttcttttaccactcatcgaaggt |
43640146 |
T |
|
| Q |
115 |
tctttcagagcttgtcttcaaccaggagaaaacaataacaacgtggacatttgcatggaaagtggatccacacgtgttgttgaatcaactttcaaaacat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43640145 |
tctttcagagcttgtcttcaaccaggagaaaacaataacaacgtggacatttgcatggaaagtggatccacacgtgttgttgaatcaactttcaaaacat |
43640046 |
T |
|
| Q |
215 |
gtttatacattcatgcaaacttcgatccttatatattaatgaacgaagcgattaaggttgttagagaccaccttggaacattcaaacttctagaagaaaa |
314 |
Q |
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| T |
43640045 |
gtttatacattcatgcaaacttcgatccttatatattaatgaacgaagcgattaaggttgttagagaccaccttggaacattcaaacttctagaagaaaa |
43639946 |
T |
|
| Q |
315 |
aacaatacctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtagaccctcaaggagtgaaagaaggtgttaagggttta |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43639945 |
aacaatacctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtggaccctcaaggagtgaaagaaggtgttaagggttta |
43639846 |
T |
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| Q |
415 |
gtagaaggtgggtgtcctccaagttttgtaatcattgatgatggttggcaaaatttttgtcgtgatgatgaagcttttttgaacggtggtgattgtttaa |
514 |
Q |
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| T |
43639845 |
gtagaaggtgggtgtcctccaagttttgtaatcattgatgatggttggcaaaatttttgtcgtgatgatgaagattttttgaacggtggtgattgtttaa |
43639746 |
T |
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| Q |
515 |
gtttgaattgttctatacctggtgaacaaatgttgggaaggttaataagttttgaagaaaataaaaaatttaaggaatatgatgaatctttaggtatggg |
614 |
Q |
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| T |
43639745 |
gtttgaattgttctatacctggcgaacaaatgttgggaaggttaataagttttgaagaaaataaaaaatttaaggaatatgatgaatctttaggtatggg |
43639646 |
T |
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| Q |
615 |
tgggtttgtgagggatttaaaggaggaatttaggggtttattaaaggaggtttatgtgtggcatgctttttgtgggtattggggtgggattaggcctaat |
714 |
Q |
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| T |
43639645 |
tgggtttgtgagggatttaaaggaggaatttaggggtttattaaaggaggtttatgtgtggcatgctttttgtgggtattggggtgggattaggcctaat |
43639546 |
T |
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| Q |
715 |
gttga |
719 |
Q |
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| T |
43639545 |
gttga |
43639541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 301 - 465
Target Start/End: Original strand, 486412 - 486576
Alignment:
| Q |
301 |
cttctagaagaaaaaacaatacctgatatagttgataaatttggatggtgtacatgggatgcattttaccttaaggtagaccctcaaggagtgaaagaag |
400 |
Q |
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||||||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |
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| T |
486412 |
cttctagaagaaaaaactgtccccggaatagtggataaatttggatggtgtacatgggatgcattttatcttaaggtacaccctcaaggagtttgggaag |
486511 |
T |
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| Q |
401 |
gtgttaagggtttagtagaaggtgggtgtcctccaagttttgtaatcattgatgatggttggcaa |
465 |
Q |
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||||||||| |||| || ||||| ||||| || | ||||| | |||||||||||||||||| |
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| T |
486512 |
gtgttaaggatttatctgatggtggttgtccacctggctttgtcttgattgatgatggttggcaa |
486576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 719
Target Start/End: Original strand, 486766 - 486818
Alignment:
| Q |
667 |
tatgtgtggcatgctttttgtgggtattggggtgggattaggcctaatgttga |
719 |
Q |
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| T |
486766 |
tatgtgtggcatgctttatgtggttattggggtgggataagacctaatgttga |
486818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 36432444 - 36432407
Alignment:
| Q |
331 |
gttgataaatttggatggtgtacatgggatgcatttta |
368 |
Q |
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| T |
36432444 |
gttgataaatttggttggtgtacatgggatgcttttta |
36432407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 713
Target Start/End: Complemental strand, 34698263 - 34698214
Alignment:
| Q |
664 |
gtttatgtgtggcatgctttttgtgggtattggggtgggattaggcctaa |
713 |
Q |
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|||||||| |||||||| |||||||||||||||||||| |||| ||||| |
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| T |
34698263 |
gtttatgtttggcatgcactttgtgggtattggggtggggttagacctaa |
34698214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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