View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2995_low_14 (Length: 261)
Name: NF2995_low_14
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2995_low_14 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 11317065 - 11317299
Alignment:
| Q |
13 |
cttaactaatgtcttaaggacactctttagcatttccctttattaaaaagtgacataaatatttggaatttcttaaaatctaaaaacacaacccatgttt |
112 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11317065 |
cttaactaatatcttaaggacactctttagcatttccctttattaaaaggtgacataaatatttggaatttcttaaaatctaaaaacacaacccatgttt |
11317164 |
T |
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| Q |
113 |
tacaaatttctcttcagtgatggtgtttatctgctcaaccatttcagttgtgagatgatttttccaatctccaatattaccaagacggaaaaaagctttg |
212 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11317165 |
tacaaatttctcttcagcgatggtgtttatctgctcaaccatttcagttgtgagatgatttttccaatctccaatattaccaagacggaaaaaagcttta |
11317264 |
T |
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| Q |
213 |
ttttccatattaagaaaacctttcccagtcttatt |
247 |
Q |
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| T |
11317265 |
ttttccatattaagaaaacctttcccgatcttatt |
11317299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 27505236 - 27505109
Alignment:
| Q |
78 |
gaatttcttaaaatctaaaaacacaacccatgttttacaaatttctcttcagtgatggtgtttatctgctcaaccatttcagttgtgagatgatttttcc |
177 |
Q |
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|||||||| ||||||||||||| |||||||||||| ||||||||||||| | |||||| |||||||||||||| |||||||||| ||||||||| |
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| T |
27505236 |
gaatttctcaaaatctaaaaactcaacccatgtttaccaaatttctcttcgacaactatgtttaactgctcaaccattttagttgtgagaagatttttcc |
27505137 |
T |
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| Q |
178 |
aatctccaatattaccaagacggaaaaa |
205 |
Q |
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| T |
27505136 |
aatctccaactttgccaagacggaaaaa |
27505109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 27498688 - 27498818
Alignment:
| Q |
87 |
aaaatctaaaaacacaacccatgttttacaaatttctcttcagtgatggtgtttatctgctcaaccatttcagttgtgagatgatttttccaatctccaa |
186 |
Q |
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| T |
27498688 |
aaaatctaaaaactcaacccatgtttacccaatttattttcggtgatagtgtttaattgcttaatcatttcagctgtgagaaggtttttccaatctccaa |
27498787 |
T |
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| Q |
187 |
tattaccaagacggaaaaaagctttgttttc |
217 |
Q |
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| T |
27498788 |
cttggccacgacgaaaaaaagctttattttc |
27498818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 27496473 - 27496561
Alignment:
| Q |
129 |
gtgatggtgtttatctgctcaaccatttcagttgtgagatgatttttccaatctccaatattaccaagacggaaaaaagctttgttttc |
217 |
Q |
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| T |
27496473 |
gtgatagtgtttaacagctcaatcatttctgttgtgagaagatttttccaatctccaacttgtccacgatggaaaaaagctttattttc |
27496561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 27544642 - 27544581
Alignment:
| Q |
125 |
ttcagtgatggtgtttatctgctcaaccatttcagttgtgagatgatttttccaatctccaa |
186 |
Q |
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| T |
27544642 |
ttcagtgatagtgttcaactgctcaatcatttcagttgtgagaacatttttgcaatctccaa |
27544581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 11295476 - 11295435
Alignment:
| Q |
15 |
taactaatgtcttaaggacactctttagcatttccctttatt |
56 |
Q |
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|||| |||||||||||||||||||||| ||||| |||||||| |
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| T |
11295476 |
taaccaatgtcttaaggacactctttaacattttcctttatt |
11295435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 13520714 - 13520750
Alignment:
| Q |
14 |
ttaactaatgtcttaaggacactctttagcatttccc |
50 |
Q |
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||||| ||||||||||||||||| ||||||||||||| |
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| T |
13520714 |
ttaaccaatgtcttaaggacactttttagcatttccc |
13520750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 13610249 - 13610285
Alignment:
| Q |
14 |
ttaactaatgtcttaaggacactctttagcatttccc |
50 |
Q |
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||||| ||||||||||||||||| ||||||||||||| |
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| T |
13610249 |
ttaaccaatgtcttaaggacactttttagcatttccc |
13610285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 29260142 - 29260107
Alignment:
| Q |
13 |
cttaactaatgtcttaaggacactctttagcatttc |
48 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
29260142 |
cttaacaaatgtcttaaggacactctttagcatttc |
29260107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 73536 - 73573
Alignment:
| Q |
14 |
ttaactaatgtcttaaggacactctttagcatttccct |
51 |
Q |
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|||||||||||| || |||||||||||||||||||||| |
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| T |
73536 |
ttaactaatgtcctatggacactctttagcatttccct |
73573 |
T |
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