View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2995_low_16 (Length: 249)
Name: NF2995_low_16
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2995_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 51784650 - 51784489
Alignment:
| Q |
3 |
ctcataatggatgtttctttcataatcaactttaattcctacagttccatctcatccttctttatgctcaaagttgtgccaattttccaaggttacttat |
102 |
Q |
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| T |
51784650 |
ctcataatggatgtttctttcataatcaactttaattcctacagttccatctcatccttctttatgctcaaagttgtgccaattttccaaggttacttat |
51784551 |
T |
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| Q |
103 |
tttttatccattgtatgttgcacaacattgtaagatttcattcccattaaacattctattag |
164 |
Q |
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| T |
51784550 |
tttttatccattgtatgttgcacaacattgtaagatttcattcccattaaacattctattag |
51784489 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 51783579 - 51783501
Alignment:
| Q |
161 |
ttagtgatgttgaataaatatttgaacgacgccattatttaatggtattgttggatcatttccttccaatctttctctg |
239 |
Q |
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| T |
51783579 |
ttagtgatgttgaataaatatttgaacgacgccattatttaatggtattgttggatcatttccttccgatctttctctg |
51783501 |
T |
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