View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2995_low_17 (Length: 248)
Name: NF2995_low_17
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2995_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42310170 - 42310426
Alignment:
| Q |
1 |
attataaaaatttaaaacaacacctcacacatttaaaaaattacaaacaattcactcatcacattggttgaatctagtagacaattattattactttgca |
100 |
Q |
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| T |
42310170 |
attataaaaatttaaaacaacacctcacacatttaaaaaattacaaacaattcactcatcacattggttgaatctagtagacaattattattactttgca |
42310269 |
T |
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| Q |
101 |
ttttttgaaaaacaac-----aaaatgcataacaattattataatgaagtgttaaattacatactgcatggtgtata------------tttgaacaagt |
183 |
Q |
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| T |
42310270 |
ttttttgaaaaacaacacattaaaatgcataacaattattataatgaagtgttaaattacatactgcatggtgtatatttgaacaagtttttgaacaagt |
42310369 |
T |
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| Q |
184 |
ttgaaatgttagtccaggcaccaactcccacaccaacattaatagatccgtctctgc |
240 |
Q |
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| T |
42310370 |
ttgaaatgttagtccaggaaacaactcccacaccaacattaatagatccgtccctgc |
42310426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 30205707 - 30205469
Alignment:
| Q |
3 |
tataaaaatttaaaacaacacctcacacatttaaaaaattacaaacaattcactcatcacattggttgaatctagtagacaattattattactttgcatt |
102 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | || ||||||| ||||||||||||||||| |
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| T |
30205707 |
tataaaaatttaaaacaacacctcacacgtttaaaaaattacaaacaattcactcatcacattgattgggtttactagacaaatattattactttgcatt |
30205608 |
T |
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| Q |
103 |
tttt-gaaaaacaacaaa-----atgcataacaattattataatgaagtgttaaattacatactgcatggtgtatatttgaacaagtttgaaatgttagt |
196 |
Q |
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| T |
30205607 |
tttttgaaaaacaacacattaatatgcataacaattactataatgaagtgttaaattacatactacatggtacatatttgaacaagtttgaaatgttagt |
30205508 |
T |
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| Q |
197 |
ccaggcaccaactcccacaccaacattaatagatccgtc |
235 |
Q |
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| T |
30205507 |
gcaggcatcaacccccacaccaatatgaatagatccgtc |
30205469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 29056825 - 29056715
Alignment:
| Q |
8 |
aaatttaaaacaacacctcacacatttaaaaaattacaaacaattcactcatcacattg-gttgaatctagtagacaattattattactttgcatttttt |
106 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
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| T |
29056825 |
aaatttaagacaacacctcacacatttgaaaaattacaaacaagtcactcatcacattgagttgattctactagacaattattattactttgcatttttt |
29056726 |
T |
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| Q |
107 |
gaaaaacaaca |
117 |
Q |
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| T |
29056725 |
gaaaatcaaca |
29056715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 43298395 - 43298619
Alignment:
| Q |
13 |
taaaacaacacctcacacatttaaaaaattacaaacaattcactcatcacattggttgaatctagtagacaattattattactttgcattttttgaaaaa |
112 |
Q |
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| T |
43298395 |
taaaacaacacctcacacatttaaaattttacaaacaattcattcatcacatcggttggttctactagag---tattattacttttcattttttgaaaca |
43298491 |
T |
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| Q |
113 |
caaca-----aaatgcataacaattattataatgaagtgttaaattacatactgcatggtgtatatttgaacaagtttgaaatgttagtccaggcaccaa |
207 |
Q |
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| T |
43298492 |
ctacacattgaaatgcataacaattactataatgaagtgttaaattacatactacattgtatatatttgaacaagttcaaaatgttagtccgggcaccaa |
43298591 |
T |
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| Q |
208 |
ctcccacaccaacattaatagatccgtc |
235 |
Q |
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| T |
43298592 |
cctctacaccaacatgaatagatccgtc |
43298619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 39622412 - 39622242
Alignment:
| Q |
10 |
atttaaaacaacacctcacacatttaaaaaattacaaacaattcactcatca-------cattggttgaatctagta--gacaattattattactttgca |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||| || ||||||||||||||||||||| |
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| T |
39622412 |
atttaaaacaacacctcacacatttaaaaa-ttacaaacatttcactcatcagtcatcacattggtaagttctactatagacaattattattactttgca |
39622314 |
T |
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| Q |
101 |
ttttttgaaaaacaac-----aaaatgcataacaattattataatgaagtgttaaattacatactgcatggt |
167 |
Q |
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| T |
39622313 |
ttttttgaaaaacaacacattaaaatgcataacaattactataataaagtgataaattacatactacatggt |
39622242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 39621402 - 39621330
Alignment:
| Q |
158 |
actgcatggtgtatatttgaacaagtttgaaatgttagtccaggcaccaactcccacaccaacattaatagat |
230 |
Q |
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|||||||||| |||||||||||||| ||||||||||||| ||| ||||||| |||| |||||||| ||||||| |
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| T |
39621402 |
actgcatggtatatatttgaacaagattgaaatgttagtgcagacaccaacccccataccaacatgaatagat |
39621330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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