View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2995_low_19 (Length: 236)

Name: NF2995_low_19
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2995_low_19
NF2995_low_19
[»] scaffold0084 (1 HSPs)
scaffold0084 (1-222)||(12194-12428)
[»] scaffold0046 (2 HSPs)
scaffold0046 (136-222)||(24357-24443)
scaffold0046 (1-65)||(24254-24318)
[»] chr4 (3 HSPs)
chr4 (136-222)||(43895153-43895239)
chr4 (6-77)||(43895001-43895072)
chr4 (77-105)||(43895094-43895122)
[»] chr3 (1 HSPs)
chr3 (136-222)||(17345808-17345894)


Alignment Details
Target: scaffold0084 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12428 - 12194
Alignment:
Q  1 aaggcagccgcaaaccaaaggataaaaaccagcaccaaaatcacccatcggaattatcggattaaacattctccaa--------------gaattcaatc 86  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||    
T  12428 aaggcagctgcaaaccaaaggataaaaaccagcaccaaaatcacccatcggaattatcggattaaacattctccaacaacaacctcaattgaattcaatc 12329  T
Q  87 agtttcaattttgctgattnnnnnnnnnnnnntcaatttcaannnnnnncaagaagtgatgagtcaagatttgaattgaaaggtttgaactttgaacatg 186  Q
    |||||||||||||||||||             ||| ||||||       ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  12328 agtttcaattttgctgattcaaaaaacaaaa-tcagtttcaatttttttcaagaagtggtgagtcaagatttgaattgaaaggtttggactttgaacatg 12230  T
Q  187 ttgatgagttttaagagggattgtggtggtggtggt 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  12229 ttgatgagttttaagagggattgtggtggtggtggt 12194  T

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Target: scaffold0046 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 24357 - 24443
Alignment:
Q  136 caagaagtgatgagtcaagatttgaattgaaaggtttgaactttgaacatgttgatgagttttaagagggattgtggtggtggtggt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24357 caagaagtgatgagtcaagatttgaattgaaaggtttgaactttgaacatgttgatgagttttaagagggattgtggtggtggtggt 24443  T

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Target: scaffold0046; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24254 - 24318
Alignment:
Q  1 aaggcagccgcaaaccaaaggataaaaaccagcaccaaaatcacccatcggaattatcggattaa 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24254 aaggcagccgcaaaccaaaggataaaaaccagcaccaaaatcacccatcggaattatcggattaa 24318  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 43895153 - 43895239
Alignment:
Q  136 caagaagtgatgagtcaagatttgaattgaaaggtttgaactttgaacatgttgatgagttttaagagggattgtggtggtggtggt 222  Q
    ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43895153 caagaagcggtgagtcaagatttgaattgaaaggtttggactttgaacatgttgatgagttttaagagggattgtgatggtggtggt 43895239  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 43895001 - 43895072
Alignment:
Q  6 agccgcaaaccaaaggataaaaaccagcaccaaaatcacccatcggaattatcggattaaacattctccaag 77  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43895001 agccacaaaccaaaggataaaaaccagcaccaaaatcatccatcggaattatcggattaaacattctccaag 43895072  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 43895094 - 43895122
Alignment:
Q  77 gaattcaatcagtttcaattttgctgatt 105  Q
    |||||||||||||||||||||||||||||    
T  43895094 gaattcaatcagtttcaattttgctgatt 43895122  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 17345894 - 17345808
Alignment:
Q  136 caagaagtgatgagtcaagatttgaattgaaaggtttgaactttgaacatgttgatgagttttaagagggattgtggtggtggtggt 222  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||| || ||||||||||| ||| |||||||||||||||||||| ||||    
T  17345894 caagaagtggtgagtgaagatttgaattcaaaggtttggactatggacatgttgatgtgttgtaagagggattgtggtggtgatggt 17345808  T

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