View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2995_low_22 (Length: 204)

Name: NF2995_low_22
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2995_low_22
NF2995_low_22
[»] chr4 (15 HSPs)
chr4 (13-189)||(3821604-3821780)
chr4 (13-189)||(3812031-3812207)
chr4 (10-189)||(3952891-3953068)
chr4 (10-189)||(4026573-4026752)
chr4 (13-189)||(4003340-4003516)
chr4 (13-185)||(4011819-4011991)
chr4 (10-189)||(3915847-3916026)
chr4 (18-189)||(3926841-3927012)
chr4 (13-110)||(4220842-4220939)
chr4 (29-186)||(3988245-3988402)
chr4 (26-186)||(3962286-3962446)
chr4 (26-141)||(4019629-4019744)
chr4 (26-87)||(4318238-4318299)
chr4 (44-110)||(3792737-3792803)
chr4 (44-109)||(3825890-3825955)
[»] chr5 (1 HSPs)
chr5 (10-180)||(13399178-13399348)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 3821604 - 3821780
Alignment:
Q  13 caatgaaatggaagatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgctttcca 112  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||| |    
T  3821604 caatgaaatgggagatccttcaattgcttcaaaaagtgaatgtgatatgtcatctcccctcgtaagtgcgtcatcaacaaaggcatttatttgctttcga 3821703  T
Q  113 ggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaacgtcatactt 189  Q
    ||||||||||||  ||||||||||||||||  | ||||||| |||||||||||||||||||||||||| ||||||||    
T  3821704 ggaaaagccttaaccaaatggctaagaaagctgtggcggatatcctcgcccctaaagcttacaaaaacatcatactt 3821780  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 3812031 - 3812207
Alignment:
Q  13 caatgaaatggaagatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgctttcca 112  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |    
T  3812031 caatgaaatgggagatccttccattgcttctacaagtgaatgtgatatgtcatctcccctcttaagtttctcatcaagaaaggcatttatttgctttcga 3812130  T
Q  113 ggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaacgtcatactt 189  Q
    | |||||||| || ||||||||||||||||     ||||||||||||||||||||||||||||||||| ||||||||    
T  3812131 gaaaaagcctcagccaaatggctaagaaagaacttgcggatgtcctcgcccctaaagcttacaaaaacatcatactt 3812207  T

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Target: chr4; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 3953068 - 3952891
Alignment:
Q  10 gatcaatgaaatggaagatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgcttt 109  Q
    ||||||||||||| | ||||||||||||||||||| || ||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3953068 gatcaatgaaatgaacgatccttcaattgcttcaaaaattgaatg--atatgtcatctcccctcttaagtttgtcatcaacaaaggcatttatttgcttt 3952971  T
Q  110 ccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaacgtcatactt 189  Q
      |||||||||||||| |||||| | |||||||  | ||||||||||||| |||||||||||||||||||| ||||||||    
T  3952970 tgaggaaaagccttagccaaatgaccaagaaagccgtggcggatgtcctctcccctaaagcttacaaaaacatcatactt 3952891  T

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Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 4026573 - 4026752
Alignment:
Q  10 gatcaatgaaatggaagatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgcttt 109  Q
    ||||||||||||| | |||||||| |||||||| ||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4026573 gatcaatgaaatgaatgatccttctattgcttctacaagtgaattcgatatgtcatctcccctcttaagtttgtcatcaacaaaggcatttatttgcttt 4026672  T
Q  110 ccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaacgtcatactt 189  Q
    | || ||||||||||| |||||||| |||||||  | ||||||||||||| ||||||||| |||| ||||| ||||||||    
T  4026673 cgagaaaaagccttagccaaatggccaagaaagccgtggcggatgtcctcacccctaaagtttacgaaaacatcatactt 4026752  T

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Target: chr4; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 4003340 - 4003516
Alignment:
Q  13 caatgaaatggaagatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgctttcca 112  Q
    |||||||||| | ||||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||| || |||||||||||||||||||| || | |    
T  4003340 caatgaaatgaatgatccttcaattgcttctacaagtgcatgtgatatatcatctcccctcttaagtttttcgtcaacaaaggcatttatttgtttacga 4003439  T
Q  113 ggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaacgtcatactt 189  Q
    |||||||| ||| ||||||||| ||||||   | | |||||||||||||||||||||||||||||||| ||||||||    
T  4003440 ggaaaagctttaatcaaatggccaagaaatccgtgacggatgtcctcgcccctaaagcttacaaaaacatcatactt 4003516  T

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Target: chr4; HSP #6
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 4011819 - 4011991
Alignment:
Q  13 caatgaaatggaagatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgctttcca 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| |    
T  4011819 caatgaaatgggagatccttcaattgcttcaacaagtgaatgtgacatgtcatctcccctcttaagtttctcatcaacaaaggcatttatttgctttcga 4011918  T
Q  113 ggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaacgtcat 185  Q
    ||||||||  ||  |||||||| || |||   | |||||||||| || || ||||||||||||||||| ||||    
T  4011919 ggaaaagcgataaccaaatggccaaaaaatccgtggcggatgtcttcacctctaaagcttacaaaaacatcat 4011991  T

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Target: chr4; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 3916026 - 3915847
Alignment:
Q  10 gatcaatgaaatggaagatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgcttt 109  Q
    ||||||||||||| | |||||||| ||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  3916026 gatcaatgaaatgaatgatccttcgattgcttcaccaagtgaatctgatatgtcatctcccctcttaagtttgtcatcaacaaaagcatttatttgcttt 3915927  T
Q  110 ccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaacgtcatactt 189  Q
      |  ||||||||||  ||||||||||||||||  ||  ||||| |||| ||| ||||||||||||||||| ||||||||    
T  3915926 tgacaaaaagccttaaccaaatggctaagaaagccgctacggatttccttgccactaaagcttacaaaaacatcatactt 3915847  T

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Target: chr4; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 3927012 - 3926841
Alignment:
Q  18 aaatggaagatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgctttccaggaaa 117  Q
    ||||||| |||||||  ||||||||||||||||||| |||||||||| ||||||| | |||||||||||||||||| |||||||||||||||  | ||||    
T  3927012 aaatggatgatcctttgattgcttcaacaagtgaatctgatatgtcatctcccctgtgaagtttgtcatcaacaaaagcatttatttgcttttgaagaaa 3926913  T
Q  118 agccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaacgtcatactt 189  Q
    |||||||  ||||||||||||||||  ||  || ||||||| ||| ||||||||||||||||| ||||||||    
T  3926912 agccttaaccaaatggctaagaaagctgctacgaatgtccttgccactaaagcttacaaaaacatcatactt 3926841  T

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Target: chr4; HSP #9
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 4220842 - 4220939
Alignment:
Q  13 caatgaaatggaagatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgctttc 110  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||| ||||||||||  ||||||||| ||||    
T  4220842 caatgaaatggatgatccttcaattgcttcaccaagtgaatgtgatatgtcatctcctttcttaagtttgtaatcaacaaagatatttatttgttttc 4220939  T

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Target: chr4; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 3988245 - 3988402
Alignment:
Q  29 ccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgctttccaggaaaagccttagtca 128  Q
    |||||||||||||||||||||||||||   || ||| |||||||||||| | |||  || |||||| ||||||||| ||||  | |||||||||||  ||    
T  3988245 ccttcaattgcttcaacaagtgaatgtttgatttcatctcccctcttaattatgttgtctacaaagacatttattttcttttgacgaaaagccttaacca 3988344  T
Q  129 aatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaacgtcata 186  Q
    |||||| |||||||  |   |||||||||| |||||||||||| |||||||| |||||    
T  3988345 aatggccaagaaagccgtctcggatgtccttgcccctaaagctcacaaaaacatcata 3988402  T

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Target: chr4; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 3962446 - 3962286
Alignment:
Q  26 gatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgctttccaggaaaagccttag 125  Q
    |||||||||||||||   |||||||| |||| ||| ||| |||||||||||||||| ||||| |||||||| ||||||| ||||| |  |||| ||| |     
T  3962446 gatccttcaattgctctgacaagtgattgtggtatttcatctcccctcttaagtttatcatctacaaaggcttttattttctttcgatcaaaatcctcaa 3962347  T
Q  126 tcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaacgtcata 186  Q
    ||||||| |||||||| |    ||||||||| ||||| | |||||| |||||||| |||||    
T  3962346 tcaaatgactaagaaaattcgcgcggatgtcttcgccgcgaaagctaacaaaaacatcata 3962286  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 4019629 - 4019744
Alignment:
Q  26 gatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgctttccaggaaaagccttag 125  Q
    |||||||||||| ||   |||||||| |||  ||| ||| ||||||||||||| |  |||||||||||||| ||||||| ||||| | | ||||||| |     
T  4019629 gatccttcaattcctctgacaagtgattgtagtatttcatctcccctcttaagctcatcatcaacaaaggcttttattttctttcgacgtaaagcctcaa 4019728  T
Q  126 tcaaatggctaagaaa 141  Q
    ||||||||||||||||    
T  4019729 tcaaatggctaagaaa 4019744  T

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Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 4318299 - 4318238
Alignment:
Q  26 gatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatc 87  Q
    ||||||| |||||||||||||| |||||||||||| ||| | ||||||||||| ||||||||    
T  4318299 gatcctttaattgcttcaacaaatgaatgtgatatttcatcccccctcttaagcttgtcatc 4318238  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 3792737 - 3792803
Alignment:
Q  44 acaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgctttc 110  Q
    |||||||| |||| ||| ||| |||||||||||||||  |||||||||||||| ||||||| |||||    
T  3792737 acaagtgattgtggtatttcatctcccctcttaagttcatcatcaacaaaggcttttatttcctttc 3792803  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 3825890 - 3825955
Alignment:
Q  44 acaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgcttt 109  Q
    |||||||| |||| ||| ||| |||||||||||||||  |||||||||||||| ||||||| ||||    
T  3825890 acaagtgattgtggtatttcatctcccctcttaagttcatcatcaacaaaggcttttatttccttt 3825955  T

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Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 13399178 - 13399348
Alignment:
Q  10 gatcaatgaaatggaagatccttcaattgcttcaacaagtgaatgtgatatgtcacctcccctcttaagtttgtcatcaacaaaggcatttatttgcttt 109  Q
    ||||||||||||  | |||||||| |||||||||| |||||||||||||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  13399178 gatcaatgaaataaatgatccttcgattgcttcaaaaagtgaatgtgatatgtcatttcccctcttaagtttgtcgtcaacaaagacatttatttgcttt 13399277  T
Q  110 ccaggaaaagccttagtcaaatggctaagaaagtggcggcggatgtcctcgcccctaaagcttacaaaaac 180  Q
      || ||||||||||  |||||||| |||||||  | || |||||||||| ||||||||||||||||||||    
T  13399278 tgagaaaaagccttaaacaaatggccaagaaagccgtggtggatgtcctcacccctaaagcttacaaaaac 13399348  T

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