View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2995_low_4 (Length: 458)
Name: NF2995_low_4
Description: NF2995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2995_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 34580426 - 34579976
Alignment:
| Q |
1 |
caaccattatactacgttattgagatggcgtctcaacaatatatatatcaaatccatttggttagaaatcattctgcatgctcaattcaccaagtaagct |
100 |
Q |
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| T |
34580426 |
caaccattatactacgttattgagatggcgtctcaacaatatatat--caaatccatttggttagaaatcattctgcatactcagttcaccaagtaagct |
34580329 |
T |
|
| Q |
101 |
agctgcttgtaacagctatatatgtataaaattatacaaacattatatcacatgagaattacttattgtaattaacatgaaaaattcaccaagttgcttt |
200 |
Q |
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| T |
34580328 |
agctgcttgtaacagctatatatgtataaaattatgcaaacattataccacatgagaattacttattgtaattaatatggaaaattcaccaagttgcttt |
34580229 |
T |
|
| Q |
201 |
aaagatacttcaatcaacccaaaatatcggaactactcagatcagtaaaacaagaatattgacctgacattatgagctacttgctctaaaaggacaaatt |
300 |
Q |
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| T |
34580228 |
aaagatacttcaatcaacccaaaatatcgga---actcagatcagtaaaacaagaatattgacctgacattatgagcaacttgctctaaaaggacaaatt |
34580132 |
T |
|
| Q |
301 |
ggaacatagcaaggaaatnnnnnnntaaa-ggtcttactaaccgatgtctctgaaacactgattaaagtagtagaaaaacaagttttaagatgaaacaac |
399 |
Q |
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| T |
34580131 |
ggaacatagcaaggaaataaataaataaagggtcctactaaccagtatctctgaaacactaattaaggtagtagaaaaacacgttttaagttgaaacaat |
34580032 |
T |
|
| Q |
400 |
atgttttatacgtttgaggaattgattacacaatcttcaatacaatactattatat |
455 |
Q |
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| T |
34580031 |
attttttacacgtttgaggaattgattacacaaacttcaatacaatactattatat |
34579976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 455
Target Start/End: Complemental strand, 41143890 - 41143808
Alignment:
| Q |
374 |
aaaaacaagttttaagatgaa-acaacatgttttatacgtttgaggaattgattacacaatcttcaatacaatactattatat |
455 |
Q |
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|||| ||||||||||| |||| ||||| | ||||| || ||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
41143890 |
aaaagcaagttttaagttgaagacaacgttttttacacttttgaggaattgattacacaagttccaatacaatactattatat |
41143808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 41128795 - 41128877
Alignment:
| Q |
374 |
aaaaacaagttttaagatgaa-acaacatgttttatacgtttgaggaattgattacacaatcttcaatacaatactattatat |
455 |
Q |
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||||||||||||| || |||| ||||| | ||||| || ||||||||||||||||||||| | ||||| ||||||||||||| |
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| T |
41128795 |
aaaaacaagttttcagttgaagacaacgttttttacacttttgaggaattgattacacaagttccaatataatactattatat |
41128877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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